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RINT-1 / TIP-1 family [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837360, updated on 18-Sep-2024

Summary

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Official Full Name
RINT-1 / TIP-1 family
Primary source
TAIR:AT1G08400
Locus tag
AT1G08400
See related
Araport:AT1G08400
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T27G7.8; T27G7_8
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (2643019..2646048, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene decapping 1 Neighboring gene recQ-mediated instability-like protein Neighboring gene photosystem I subunit O Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene BRI1 suppressor 1 (BSU1)-like 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. MAIGO2 is involved in abscisic acid-mediated response to abiotic stresses and Golgi-to-ER retrograde transport. Zhao P, et al. Physiol Plant, 2013 Jun. PMID 23025793
  2. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_100713.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in COPI-coated Golgi to ER transport vesicle TAS
Traceable Author Statement
more info
 PubMed 
located_in COPII-coated ER to Golgi transport vesicle TAS
Traceable Author Statement
more info
 PubMed 
part_of Dsl1/NZR complex IEA
Inferred from Electronic Annotation
more info
  
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in endoplasmic reticulum IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
RINT-1 / TIP-1 family
NP_172316.2
  • RINT-1 / TIP-1 family; CONTAINS InterPro DOMAIN/s: RINT-1/TIP-1 (InterPro:IPR007528); BEST Arabidopsis thaliana protein match is: RINT-1 / TIP-1 family (TAIR:AT3G47700.1); Has 146 Blast hits to 144 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 64; Fungi - 34; Plants - 43; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2643019..2646048 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100713.3 → NP_172316.2  RINT-1 / TIP-1 family [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172316.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GXP1, Q9SJF2
    UniProtKB/TrEMBL
    A0A178W9P1, A0A654EIM8, A0A7G2DTV0
    Conserved Domains (1) summary
    pfam04437
    Location:293 → 794
    RINT1_TIP1; RINT-1 / TIP-1 family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GXP1.1

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