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trimethylguanosine synthase (DUF707) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837320, updated on 18-Sep-2024

Summary

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Official Full Name
trimethylguanosine synthase (DUF707)
Primary source
TAIR:AT1G08040
Locus tag
AT1G08040
See related
Araport:AT1G08040
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6D22.12; T6D22_12
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Genomic context

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Location:
chromosome: 1
Exon count:
15
Sequence:
Chromosome: 1; NC_003070.9 (2495309..2498764, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GATA transcription factor 11 Neighboring gene tyrosylprotein sulfotransferase Neighboring gene uncharacterized protein Neighboring gene Zinc finger (C3HC4-type RING finger) family protein Neighboring gene ATP-dependent helicase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Separating Golgi Proteins from Cis to Trans Reveals Underlying Properties of Cisternal Localization. Parsons HT, et al. Plant Cell, 2019 Sep. PMID 31266899, Free PMC Article
  2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001035917.1
NM_001331753.1
NM_001331754.1
NM_100678.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables glycosyltransferase activity ISM
Inferred from Sequence Model
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in Golgi trans cisterna HDA PubMed 
located_in endosome HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in trans-Golgi network HDA PubMed 

General protein information

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Preferred Names
trimethylguanosine synthase (DUF707)
NP_001030994.1
  • Protein of unknown function (DUF707); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT2G28310.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_563805.1
  • Protein of unknown function (DUF707); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF707 (InterPro:IPR007877); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF707) (TAIR:AT2G28310.3); Has 328 Blast hits to 327 proteins in 28 species: Archae - 0; Bacteria - 17; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2495309..2498764 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100678.3 → NP_563805.1  trimethylguanosine synthase (DUF707) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563805.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WIU3, A0A384LJC2, Q93ZR2
    Conserved Domains (1) summary
    pfam05212
    Location:85 → 372
    DUF707; Protein of unknown function (DUF707)

  2. NM_001331753.1 → NP_001322760.1  trimethylguanosine synthase (DUF707) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AV11

  3. NM_001331754.1 → NP_001322761.1  trimethylguanosine synthase (DUF707) [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WIU3, A0A384LJC2, Q93ZR2
    Conserved Domains (1) summary
    pfam05212
    Location:85 → 372
    DUF707; Protein of unknown function (DUF707)

  4. NM_001035917.1 → NP_001030994.1  trimethylguanosine synthase (DUF707) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030994.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WIU3, A0A384LJC2, Q93ZR2
    Conserved Domains (1) summary
    pfam05212
    Location:85 → 372
    DUF707; Protein of unknown function (DUF707)
Nucleotide Protein
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