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GATA11 GATA transcription factor 11 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837316, updated on 18-Sep-2024

Summary

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Official Symbol
GATA11
Official Full Name
GATA transcription factor 11
Primary source
TAIR:AT1G08010
Locus tag
AT1G08010
See related
Araport:AT1G08010
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
GATA transcription factor 11; T6D22.28; T6D22_28
Summary
Encodes a member of the GATA factor family of zinc finger transcription factors.
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Genomic context

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See GATA11 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_003070.9 (2485848..2488085, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene SIT4 phosphatase-associated family protein Neighboring gene GATA transcription factor 10 Neighboring gene serine/threonine-protein phosphatase 6 regulatory subunit Neighboring gene tyrosylprotein sulfotransferase Neighboring gene uncharacterized protein Neighboring gene trimethylguanosine synthase (DUF707)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084016.2
NM_001331749.1
NM_100675.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
GATA transcription factor 11
NP_001077485.1
  • GATA transcription factor 11 (GATA11); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 10 (TAIR:AT1G08000.2); Has 1564 Blast hits to 1518 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 649; Plants - 800; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).
NP_172279.1
  • GATA transcription factor 11 (GATA11); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 10 (TAIR:AT1G08000.2); Has 1564 Blast hits to 1518 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 649; Plants - 800; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2485848..2488085 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100675.4 → NP_172279.1  GATA transcription factor 11 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172279.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6DBP8
    UniProtKB/TrEMBL
    A0A178WRD7, A0A384LF57, A0A7G2DR97, Q0WNS0
    Conserved Domains (1) summary
    smart00401
    Location:217 → 270
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]

  2. NM_001084016.2 → NP_001077485.1  GATA transcription factor 11 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077485.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6DBP8
    UniProtKB/TrEMBL
    A0A178WRD7, A0A384LF57, A0A7G2DR97, Q0WNS0
    Conserved Domains (1) summary
    smart00401
    Location:217 → 270
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]

  3. NM_001331749.1 → NP_001320942.1  GATA transcription factor 11 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6DBP8
    UniProtKB/TrEMBL
    A0A178WRD7, A0A384LF57, A0A7G2DR97, Q0WNS0
    Conserved Domains (1) summary
    smart00401
    Location:217 → 270
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6DBP8.1

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