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MED22B Surfeit locus protein 5 subunit 22 of Mediator complex [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837310, updated on 18-Sep-2024

Summary

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Official Symbol
MED22B
Official Full Name
Surfeit locus protein 5 subunit 22 of Mediator complex
Primary source
TAIR:AT1G07950
Locus tag
AT1G07950
See related
Araport:AT1G07950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T6D22.4; T6D22_4
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Genomic context

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See MED22B in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (2465729..2467165, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GTP binding Elongation factor Tu family protein Neighboring gene GTP binding Elongation factor Tu family protein Neighboring gene pseudo Neighboring gene PDI-like 5-1 Neighboring gene cytochrome B561, amino-terminal protein Neighboring gene nuclear factor Y, subunit C10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Interaction map of Arabidopsis Mediator complex expounding its topology. Maji S, et al. Nucleic Acids Res, 2019 May 7. PMID 30793213, Free PMC Article
  2. Purification of a plant mediator from Arabidopsis thaliana identifies PFT1 as the Med25 subunit. Bäckström S, et al. Mol Cell, 2007 Jun 8. PMID 17560376
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_100669.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of mediator complex IDA
Inferred from Direct Assay
more info
 PubMed 
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Surfeit locus protein 5 subunit 22 of Mediator complex
NP_563802.1
  • MED22B; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med22 (InterPro:IPR009332); BEST Arabidopsis thaliana protein match is: Surfeit locus protein 5 subunit 22 of Mediator complex (TAIR:AT1G16430.1); Has 245 Blast hits to 245 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 164; Fungi - 15; Plants - 53; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2465729..2467165 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001331744.1 → NP_001322426.1  Surfeit locus protein 5 subunit 22 of Mediator complex [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ATZ6

  2. NM_100669.4 → NP_563802.1  Surfeit locus protein 5 subunit 22 of Mediator complex [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563802.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LCH5, Q9LN12
    UniProtKB/TrEMBL
    A0A178WMZ4, A0A5S9T7C9, A0A5S9URM1, A0A654EB59
    Conserved Domains (1) summary
    pfam06179
    Location:35 → 134
    Med22; Surfeit locus protein 5 subunit 22 of Mediator complex
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LCH5.1

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