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Leucine-rich repeat transmembrane protein kinase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837278, updated on 18-Sep-2024

Summary

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Official Full Name
Leucine-rich repeat transmembrane protein kinase
Primary source
TAIR:AT1G07650
Locus tag
AT1G07650
See related
Araport:AT1G07650
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F24B9.29; F24B9_29
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Genomic context

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Location:
chromosome: 1
Exon count:
24
Sequence:
Chromosome: 1; NC_003070.9 (2359111..2366736, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Dof-type zinc finger DNA-binding family protein Neighboring gene dessication-induced 1VOC superfamily protein Neighboring gene Histone superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Protein Phosphorylation Dynamics Under Carbon/Nitrogen-Nutrient Stress and Identification of a Cell Death-Related Receptor-Like Kinase in Arabidopsis. Li X, et al. Front Plant Sci, 2020. PMID 32308664, Free PMC Article
  2. A brassinosteroid-signaling kinase interacts with multiple receptor-like kinases in Arabidopsis. Xu P, et al. Mol Plant, 2014 Feb. PMID 24051702, Free PMC Article
  3. The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes. Singh R, et al. Front Plant Sci, 2020. PMID 32194606, Free PMC Article
  4. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
  5. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001198001.2
NM_001331714.1
NM_001331715.1
NM_100638.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein kinase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within response to nutrient levels IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Leucine-rich repeat transmembrane protein kinase
NP_001184930.1
  • Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Malectin/receptor-like protein kinase (InterPro:IPR021720), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G53430.1).
NP_172244.2
  • Leucine-rich repeat transmembrane protein kinase; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT1G53430.1); Has 190432 Blast hits to 138472 proteins in 4783 species: Archae - 131; Bacteria - 16225; Metazoa - 53388; Fungi - 11706; Plants - 85318; Viruses - 481; Other Eukaryotes - 23183 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2359111..2366736 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100638.5 → NP_172244.2  Leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172244.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0LGE0, Q94JZ3, Q9LQN8, Q9LQN9
    UniProtKB/TrEMBL
    A0A178WEV7
    Conserved Domains (4) summary
    smart00219
    Location:682 → 950
    TyrKc; Tyrosine kinase, catalytic domain
    cd14066
    Location:684 → 952
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    sd00033
    Location:116 → 137
    LRR_RI; leucine-rich repeat [structural motif]
    pfam11721
    Location:415 → 603
    Malectin; Di-glucose binding within endoplasmic reticulum

  2. NM_001331714.1 → NP_001321137.1  Leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WEV7, A0A1P8APW9

  3. NM_001198001.2 → NP_001184930.1  Leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001184930.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9T4Z5, A0A654E8N4, F4HSE1
    Conserved Domains (3) summary
    PLN00113
    Location:103 → 957
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
    cd14066
    Location:690 → 958
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
    sd00033
    Location:122 → 143
    LRR_RI; leucine-rich repeat [structural motif]

  4. NM_001331715.1 → NP_001321136.1  Leucine-rich repeat transmembrane protein kinase [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AQ09
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
C0LGE0.1

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