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TBL25 TRICHOME BIREFRINGENCE-LIKE 25 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837247, updated on 18-Sep-2024

Summary

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Official Symbol
TBL25
Official Full Name
TRICHOME BIREFRINGENCE-LIKE 25
Primary source
TAIR:AT1G01430
Locus tag
AT1G01430
See related
Araport:AT1G01430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F6F3.23; F6F3_23; TRICHOME BIREFRINGENCE-LIKE 25
Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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Genomic context

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See TBL25 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (156477..158823, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pumilio 22 Neighboring gene UDP-glucosyl transferase 72B3 Neighboring gene hypothetical protein (DUF3133) Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Members of the DUF231 Family are O-Acetyltransferases Catalyzing 2-O- and 3-O-Acetylation of Mannan. Zhong R, et al. Plant Cell Physiol, 2018 Nov 1. PMID 30102392
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_100025.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables O-acetyltransferase activity IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
TRICHOME BIREFRINGENCE-LIKE 25
NP_171650.2
  • TRICHOME BIREFRINGENCE-LIKE 25 (TBL25); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 26 (TAIR:AT4G01080.1); Has 1353 Blast hits to 1335 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 1340; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    156477..158823 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100025.3 → NP_171650.2  TRICHOME BIREFRINGENCE-LIKE 25 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_171650.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84JH9, Q9LNI0
    UniProtKB/TrEMBL
    A0A346P850, A0A654E5T8
    Conserved Domains (2) summary
    pfam13839
    Location:151 → 446
    PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
    pfam14416
    Location:97 → 150
    PMR5N; PMR5 N terminal Domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84JH9.1

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