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Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837231, updated on 18-Sep-2024

Summary

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Official Full Name
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
Primary source
TAIR:AT1G07200
Locus tag
AT1G07200
See related
Araport:AT1G07200
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F10K1.9; F10K1_9; SMAX1-like 6; SMXL6
Summary
Encodes a member of an eight-gene family (SMAX1 and SMAX1-like) that has weak similarity to AtHSP101, a ClpB chaperonin required for thermotolerance.
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Genomic context

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Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (2208477..2212718, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene alternative NAD(P)H dehydrogenase 1 Neighboring gene Lon protease Neighboring gene Ribosomal protein S18 Neighboring gene O-glucosyltransferase rumi-like protein (DUF821) Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Negative Roles of Strigolactone-Related SMXL6, 7 and 8 Proteins in Drought Resistance in Arabidopsis. Li W, et al. Biomolecules, 2020 Apr 14. PMID 32295207, Free PMC Article
  2. SUPPRESSOR OF MAX2 LIKE 6, 7, and 8 Interact with DDB1 BINDING WD REPEAT DOMAIN HYPERSENSITIVE TO ABA DEFICIENT 1 to Regulate the Drought Tolerance and Target SUCROSE NONFERMENTING 1 RELATED PROTEIN KINASE 2.3 to Abscisic Acid Response in Arabidopsis. Lian Y, et al. Biomolecules, 2023 Sep 18. PMID 37759806, Free PMC Article
  3. Strigolactone Signaling in Arabidopsis Regulates Shoot Development by Targeting D53-Like SMXL Repressor Proteins for Ubiquitination and Degradation. Wang L, et al. Plant Cell, 2015 Nov. PMID 26546446, Free PMC Article
  4. SUPPRESSOR OF MORE AXILLARY GROWTH2 1 controls seed germination and seedling development in Arabidopsis. Stanga JP, et al. Plant Physiol, 2013 Sep. PMID 23893171, Free PMC Article
  5. SMAX1-LIKE/D53 Family Members Enable Distinct MAX2-Dependent Responses to Strigolactones and Karrikins in Arabidopsis. Soundappan I, et al. Plant Cell, 2015 Nov. PMID 26546447, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Negative Roles of Strigolactone-Related SMXL6, 7 and 8 Proteins in Drought Resistance in Arabidopsis.
    Title: Negative Roles of Strigolactone-Related SMXL6, 7 and 8 Proteins in Drought Resistance in Arabidopsis.
  2. In Arabidopsis, D53-like SMXLs act with TPR2 to repress transcription and so allow lateral bud outgrowth but that strigolactone-induced degradation of D53-like proteins activates transcription to inhibit outgrowth. [SMXL6]
    Title: Strigolactone Signaling in Arabidopsis Regulates Shoot Development by Targeting D53-Like SMXL Repressor Proteins for Ubiquitination and Degradation.
  3. Data suggests that SMAX1 and SMXL6,7,8 repress karrikin and strigolactone signaling, respectively, and that all MAX2-dependent growth effects are mediated by degradation of SMAX1/SMXL proteins. [SMXL6]
    Title: SMAX1-LIKE/D53 Family Members Enable Distinct MAX2-Dependent Responses to Strigolactones and Karrikins in Arabidopsis.
Submit: New GeneRIF Correction

General gene information

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NM_001084005.3
NM_100594.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within response to strigolactone IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to water deprivation IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
NP_001077474.1
  • Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATP binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G29970.1); Has 14612 Blast hits to 14412 proteins in 2715 species: Archae - 17; Bacteria - 11575; Metazoa - 78; Fungi - 306; Plants - 572; Viruses - 0; Other Eukaryotes - 2064 (source: NCBI BLink).
NP_172200.2
  • Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein; BEST Arabidopsis thaliana protein match is: Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G29970.1); Has 14609 Blast hits to 14609 proteins in 2753 species: Archae - 17; Bacteria - 11747; Metazoa - 78; Fungi - 268; Plants - 440; Viruses - 0; Other Eukaryotes - 2059 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2208477..2212718 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001084005.3 → NP_001077474.1  Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077474.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LML2
    UniProtKB/TrEMBL
    A0A178WIY3, A0A5S9T2M2
    Conserved Domains (2) summary
    CHL00095
    Location:185 → 772
    clpC; Clp protease ATP binding subunit
    cd19499
    Location:617 → 782
    RecA-like_ClpB_Hsp104-like; Chaperone protein ClpB/Hsp104 subfamily

  2. NM_100594.4 → NP_172200.2  Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172200.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8RWE4
    Conserved Domains (2) summary
    COG0542
    Location:62 → 350
    ClpA; ATP-dependent Clp protease ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones]
    cl21455
    Location:106 → 213
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LML2.1

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