U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

F-box/RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837172, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
F-box/RNI-like superfamily protein
Primary source
TAIR:AT1G06630
Locus tag
AT1G06630
See related
Araport:AT1G06630
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12K11.23; F12K11_23
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
6
Sequence:
Chromosome: 1; NC_003070.9 (2027606..2031388)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene tRNA-Ala Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein Neighboring gene ncRNA Neighboring gene 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help
NM_001160840.2
NM_001331636.1
NM_001331639.1
NM_001331640.1
NM_001331641.1
NM_001331642.1
NM_100540.7

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
F-box/RNI-like superfamily protein
NP_001154312.1
  • F-box/RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1); Has 1816 Blast hits to 1777 proteins in 27 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1813; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
NP_001318935.1
  • F-box/RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1); Has 1830 Blast hits to 1791 proteins in 27 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1827; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
NP_563769.4
  • F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1); Has 1823 Blast hits to 1784 proteins in 27 species: Archae - 2; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1819; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2027606..2031388
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001331637.1 → NP_001321698.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A1L4Z1, F4IDP7, P0C2G0
    UniProtKB/TrEMBL
    A0A654E7M7
    Conserved Domains (2) summary
    sd00032
    Location:149 → 171
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:14 → 49
    F-box; F-box domain

  2. NM_001331638.1 → NP_001321697.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ARQ2, A0A654E7M7

  3. NM_001160840.2 → NP_001154312.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154312.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A1L4Z1, F4IDP7, P0C2G0
    UniProtKB/TrEMBL
    A0A654E7M7
    Conserved Domains (2) summary
    sd00032
    Location:149 → 171
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:14 → 49
    F-box; F-box domain

  4. NM_001331639.1 → NP_001321700.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A1L4Z1, F4IDP7, P0C2G0
    UniProtKB/TrEMBL
    A0A654E7M7
    Conserved Domains (2) summary
    sd00032
    Location:149 → 171
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:14 → 49
    F-box; F-box domain

  5. NM_001331640.1 → NP_001321699.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ARS0

  6. NM_001331641.1 → NP_001321696.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ARQ2, A0A654E7M7

  7. NM_100540.7 → NP_563769.4  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563769.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654E7M7, F4IDP6
    Conserved Domains (2) summary
    sd00032
    Location:149 → 171
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:14 → 49
    F-box; F-box domain

  8. NM_001331642.1 → NP_001321695.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ARR9, A0A654E7M7

  9. NM_001331636.1 → NP_001318935.1  F-box/RNI-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A1L4Z1, F4IDP7, P0C2G0
    UniProtKB/TrEMBL
    A0A654E7M7
    Conserved Domains (2) summary
    sd00032
    Location:149 → 171
    LRR_2; leucine-rich repeat [structural motif]
    pfam00646
    Location:14 → 49
    F-box; F-box domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0C2G0.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.