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NOL1/NOP2/sun family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837167, updated on 18-Sep-2024

Summary

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Official Full Name
NOL1/NOP2/sun family protein
Primary source
TAIR:AT1G06560
Locus tag
AT1G06560
See related
Araport:AT1G06560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12K11.10; F12K11_10
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Genomic context

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Location:
chromosome: 1
Exon count:
12
Sequence:
Chromosome: 1; NC_003070.9 (2007615..2012006)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Tropomyosin-like protein Neighboring gene ATP-dependent caseinolytic (Clp) protease/crotonase family protein Neighboring gene ncRNA Neighboring gene 4-hydroxyphenylpyruvate dioxygenase Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene anaphase-promoting complex subunit

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_100535.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in RNA methylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
NOL1/NOP2/sun family protein
NP_172143.3
  • NOL1/NOP2/sun family protein; FUNCTIONS IN: methyltransferase activity, RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678), Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site (InterPro:IPR018314), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT4G26600.1); Has 13569 Blast hits to 8411 proteins in 2331 species: Archae - 604; Bacteria - 9970; Metazoa - 826; Fungi - 418; Plants - 360; Viruses - 0; Other Eukaryotes - 1391 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    2007615..2012006
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100535.4 → NP_172143.3  NOL1/NOP2/sun family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172143.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84MA1, Q9SHJ9, Q9SHK0
    UniProtKB/TrEMBL
    A0A654ECG5
    Conserved Domains (2) summary
    COG0144
    Location:252 → 593
    RsmB; 16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family [Translation, ribosomal structure and biogenesis]
    cd21150
    Location:159 → 264
    PUA_NSun6-like; PUA RNA-binding domain of the SAM-dependent methyltransferase NSun6 and similar proteins
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84MA1.1

Gene LinkOut

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