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FTSH8 FTSH protease 8 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837154, updated on 18-Sep-2024

Summary

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Official Symbol
FTSH8
Official Full Name
FTSH protease 8
Primary source
TAIR:AT1G06430
Locus tag
AT1G06430
See related
Araport:AT1G06430
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
FTSH protease 8
Summary
encodes a FtsH protease that is localized to the chloroplast
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Genomic context

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See FTSH8 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Sequence:
Chromosome: 1; NC_003070.9 (1960031..1963189, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene trehalose-phosphatase/synthase 7 Neighboring gene DNA ligase-like protein Neighboring gene Ubiquitin carboxyl-terminal hydrolase family protein Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. AtFtsH6 is involved in the degradation of the light-harvesting complex II during high-light acclimation and senescence. Zelisko A, et al. Proc Natl Acad Sci U S A, 2005 Sep 20. PMID 16157880, Free PMC Article
  2. Chloroplast and mitochondrial proteases in Arabidopsis. A proposed nomenclature. Adam Z, et al. Plant Physiol, 2001 Apr. PMID 11299370, Free PMC Article
  3. Coordinated regulation and complex formation of yellow variegated1 and yellow variegated2, chloroplastic FtsH metalloproteases involved in the repair cycle of photosystem II in Arabidopsis thylakoid membranes. Sakamoto W, et al. Plant Cell, 2003 Dec. PMID 14630971, Free PMC Article
  4. In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Friso G, et al. Plant Cell, 2004 Feb. PMID 14729914, Free PMC Article
  5. New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. Peltier JB, et al. J Biol Chem, 2004 Nov 19. PMID 15322131

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_100523.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP-dependent peptidase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within PSII associated light-harvesting complex II catabolic process TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 
located_in chloroplast thylakoid HDA PubMed 
located_in chloroplast thylakoid membrane HDA PubMed 
located_in extracellular region HDA PubMed 
located_in thylakoid HDA PubMed 

General protein information

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Preferred Names
FTSH protease 8
NP_563766.3
  • FTSH protease 8 (FTSH8); FUNCTIONS IN: metallopeptidase activity, ATP-dependent peptidase activity, ATPase activity, zinc ion binding; INVOLVED IN: PSII associated light-harvesting complex II catabolic process; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M41, FtsH (InterPro:IPR005936), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-type, conserved site (InterPro:IPR003960), Peptidase M41 (InterPro:IPR000642), Peptidase M41, FtsH extracellular (InterPro:IPR011546); BEST Arabidopsis thaliana protein match is: FtsH extracellular protease family (TAIR:AT2G30950.1); Has 41562 Blast hits to 39150 proteins in 3282 species: Archae - 1592; Bacteria - 17123; Metazoa - 4966; Fungi - 3846; Plants - 3320; Viruses - 34; Other Eukaryotes - 10681 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1960031..1963189 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001331629.1 → NP_001321589.1  FTSH protease 8 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8W585, Q94AL5, Q9SHI8
    UniProtKB/TrEMBL
    A0A178WM68, A0A5S9SXB2, A0A654E791
    Conserved Domains (1) summary
    CHL00176
    Location:77 → 669
    ftsH; cell division protein; Validated

  2. NM_001331628.1 → NP_001321590.1  FTSH protease 8 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8W585, Q94AL5, Q9SHI8
    UniProtKB/TrEMBL
    A0A178WM68, A0A5S9SXB2, A0A654E791
    Conserved Domains (1) summary
    CHL00176
    Location:77 → 669
    ftsH; cell division protein; Validated

  3. NM_100523.6 → NP_563766.3  FTSH protease 8 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563766.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8W585, Q94AL5, Q9SHI8
    UniProtKB/TrEMBL
    A0A178WM68, A0A5S9SXB2, A0A654E791
    Conserved Domains (1) summary
    CHL00176
    Location:77 → 669
    ftsH; cell division protein; Validated
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8W585.1

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