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CLE3 CLAVATA3/ESR-RELATED 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837132, updated on 18-Sep-2024

Summary

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Official Symbol
CLE3
Official Full Name
CLAVATA3/ESR-RELATED 3
Primary source
TAIR:AT1G06225
Locus tag
AT1G06225
See related
Araport:AT1G06225
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CLAVATA3/ESR-RELATED 3
Summary
Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.
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Genomic context

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See CLE3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_003070.9 (1905918..1906298)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ENTH/VHS/GAT family protein Neighboring gene Ribosomal protein S5/Elongation factor G/III/V family protein Neighboring gene global transcription factor group E4 Neighboring gene diiron containing four-helix bundle family ferritin protein, putative (Protein of unknown function DUF455) Neighboring gene alpha/beta-Hydrolases superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. CLE3 and its homologs share overlapping functions in the modulation of lateral root formation through CLV1 and BAM1 in Arabidopsis thaliana. Nakagami S, et al. Plant J, 2023 Mar. PMID 36628476
  2. A large family of genes that share homology with CLAVATA3. Cock JM, et al. Plant Physiol, 2001 Jul. PMID 11457943, Free PMC Article
  3. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
  4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. CLE3 and its homologs share overlapping functions in the modulation of lateral root formation through CLV1 and BAM1 in Arabidopsis thaliana.
    Title: CLE3 and its homologs share overlapping functions in the modulation of lateral root formation through CLV1 and BAM1 in Arabidopsis thaliana.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables receptor serine/threonine kinase binding ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
involved_in cell-cell signaling involved in cell fate commitment ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
located_in apoplast ISM
Inferred from Sequence Model
more info
 PubMed 
located_in apoplast ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
CLAVATA3/ESR-RELATED 3
NP_563763.1
  • CLAVATA3/ESR-RELATED 3 (CLE3); BEST Arabidopsis thaliana protein match is: CLAVATA3/ESR-RELATED 4 (TAIR:AT2G31081.1); Has 21 Blast hits to 21 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1905918..1906298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100504.2 → NP_563763.1  CLAVATA3/ESR-RELATED 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563763.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A0ME59, Q3EDH8
    UniProtKB/TrEMBL
    A0A178WPP4, A0A5S9SWI8, A0A7G2DS84
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3EDH8.1

Gene LinkOut

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