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B3 domain protein (DUF313) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837103, updated on 18-Sep-2024

Summary

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Official Full Name
B3 domain protein (DUF313)
Primary source
TAIR:AT1G05930
Locus tag
AT1G05930
See related
Araport:AT1G05930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_003070.9 (1799418..1800933)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene cell division cycle protein 48-related / CDC48-like protein Neighboring gene B3 domain protein (DUF313) Neighboring gene cationic amino acid transporter 9 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_100474.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
B3 domain protein (DUF313)
NP_172084.2
  • FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT3G24850.1); Has 119 Blast hits to 119 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 119; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1799418..1800933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100474.2 → NP_172084.2  B3 domain protein (DUF313) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172084.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9MA32
    UniProtKB/TrEMBL
    A0A178W9A6
    Conserved Domains (1) summary
    pfam03754
    Location:158 → 265
    DUF313; Domain of unknown function (DUF313)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9MA32.2

Gene LinkOut

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