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ARI5 RING/U-box superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837099, updated on 18-Sep-2024

Summary

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Official Symbol
ARI5
Official Full Name
RING/U-box superfamily protein
Primary source
TAIR:AT1G05890
Locus tag
AT1G05890
See related
Araport:AT1G05890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS ARIADNE 5; ARIADNE 5; ATARI5; T20M3.16; T20M3_16
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Genomic context

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See ARI5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Sequence:
Chromosome: 1; NC_003070.9 (1779256..1784675)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF1685) Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene endonuclease III 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_100470.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RING/U-box superfamily protein
NP_001184920.1
  • ARIADNE 5 (ARI5); FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1).
NP_172080.2
  • ARIADNE 5 (ARI5); FUNCTIONS IN: zinc ion binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1); Has 3031 Blast hits to 3006 proteins in 232 species: Archae - 0; Bacteria - 0; Metazoa - 1283; Fungi - 592; Plants - 643; Viruses - 7; Other Eukaryotes - 506 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1779256..1784675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001197991.1 → NP_001184920.1  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001184920.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IAE4
    Conserved Domains (2) summary
    smart00647
    Location:243 → 305
    IBR; In Between Ring fingers
    pfam01485
    Location:327 → 366
    IBR; IBR domain, a half RING-finger domain

  2. NM_100470.5 → NP_172080.2  RING/U-box superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172080.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q84RR1, Q8L829, Q9MA37
    UniProtKB/TrEMBL
    A0A178W7Q7, A0A178WAN2, A0A5S9SUL8
    Conserved Domains (3) summary
    smart00647
    Location:201 → 263
    IBR; In Between Ring fingers
    cd16623
    Location:132 → 182
    RING-HC_RBR_TRIAD1_like; RING finger, HC subclass, found in two RING fingers and DRIL [double RING finger linked] 1 (TRIAD1), ankyrin repeat and IBR domain-containing protein 1 (ANKIB1) and similar proteins
    pfam01485
    Location:285 → 324
    IBR; IBR domain, a half RING-finger domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8L829.1

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