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Sec23/Sec24 protein transport family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837054, updated on 18-Sep-2024

Summary

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Official Full Name
Sec23/Sec24 protein transport family protein
Primary source
TAIR:AT1G05520
Locus tag
AT1G05520
See related
Araport:AT1G05520
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T25N20.17
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Genomic context

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Location:
chromosome: 1
Exon count:
12
Sequence:
Chromosome: 1; NC_003070.9 (1630849..1636018, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene chromatin remodeling 31 Neighboring gene Calcium-dependent lipid-binding (CaLB domain) family protein Neighboring gene naphthalene 1,2-dioxygenase subunit alpha (DUF1264) Neighboring gene UDP-glucosyl transferase 75B2 Neighboring gene hypothetical protein (DUF295)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis COPII components, AtSEC23A and AtSEC23D, are essential for pollen wall development and exine patterning. Aboulela M, et al. J Exp Bot, 2018 Mar 24. PMID 29390074, Free PMC Article
  2. Endomembrane trafficking protein SEC24A regulates cell size patterning in Arabidopsis. Qu X, et al. Plant Physiol, 2014 Dec. PMID 25315606, Free PMC Article
  3. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  4. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. AtSEC23A and AtSEC23D may organize pollen wall development and exine patterning by regulating ER export of lipids and proteins necessary for pollen wall formation.
    Title: The Arabidopsis COPII components, AtSEC23A and AtSEC23D, are essential for pollen wall development and exine patterning.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_100431.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in COPII-coated vesicle budding IEA
Inferred from Electronic Annotation
more info
  
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of COPII vesicle coat IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in extracellular region HDA PubMed 

General protein information

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Preferred Names
Sec23/Sec24 protein transport family protein
NP_563741.1
  • Sec23/Sec24 protein transport family protein; FUNCTIONS IN: transporter activity, zinc ion binding; INVOLVED IN: response to salt stress, transport; LOCATED IN: COPII vesicle coat; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sec23/Sec24, helical domain (InterPro:IPR006900), Sec23/Sec24 beta-sandwich (InterPro:IPR012990), Sec23/Sec24, trunk domain (InterPro:IPR006896), Zinc finger, Sec23/Sec24-type (InterPro:IPR006895), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: Sec23/Sec24 protein transport family protein (TAIR:AT3G23660.1); Has 1391 Blast hits to 1379 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 486; Fungi - 398; Plants - 318; Viruses - 0; Other Eukaryotes - 189 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1630849..1636018 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100431.2 → NP_563741.1  Sec23/Sec24 protein transport family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563741.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8H0S3, Q93ZN7, Q9ZVY6
    UniProtKB/TrEMBL
    A0A178W7U4
    Conserved Domains (1) summary
    PLN00162
    Location:4 → 783
    PLN00162; transport protein sec23; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8H0S3.1

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