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LPA19 photosystem II 11 kDa protein-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837040, updated on 18-Sep-2024

Summary

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Official Symbol
LPA19
Official Full Name
photosystem II 11 kDa protein-like protein
Primary source
TAIR:AT1G05385
Locus tag
AT1G05385
See related
Araport:AT1G05385
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
LOW PSII ACCUMULATION 19; Psb27-H1
Summary
Encodes a Psb27 homolog involved in photosystem II biogenesis.
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Genomic context

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See LPA19 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (1582671..1583760, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene vacuole membrane-like protein Neighboring gene Sec14p-like phosphatidylinositol transfer family protein Neighboring gene Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein Neighboring gene tRNA-Asn Neighboring gene uncharacterized protein Neighboring gene CDPK adapter, putative (DUF1423)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. LPA19, a Psb27 homolog in Arabidopsis thaliana, facilitates D1 protein precursor processing during PSII biogenesis. Wei L, et al. J Biol Chem, 2010 Jul 9. PMID 20444695, Free PMC Article
  2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  3. Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. Zybailov B, et al. PLoS One, 2008 Apr 23. PMID 18431481, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001331547.1
NM_100418.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in photosystem II assembly IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within photosystem II assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in photosystem II repair IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast thylakoid lumen IDA
Inferred from Direct Assay
more info
 PubMed 
located_in cytosol HDA PubMed 
part_of photosystem II IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
photosystem II 11 kDa protein-like protein
NP_563737.1
  • LOW PSII ACCUMULATION 19 (LPA19); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosystem II assembly; LOCATED IN: chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; Has 214 Blast hits to 214 proteins in 55 species: Archae - 0; Bacteria - 73; Metazoa - 0; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1582671..1583760 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100418.3 → NP_563737.1  photosystem II 11 kDa protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563737.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GXE0, Q9ZVZ9
    UniProtKB/TrEMBL
    A0A178WJM6, A0A5S9SQ39, A0A7G2DNL1
    Conserved Domains (1) summary
    PLN00061
    Location:52 → 196
    PLN00061; photosystem II protein Psb27; Provisional

  2. NM_001331547.1 → NP_001322108.1  photosystem II 11 kDa protein-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8ASY3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZVZ9.1

Gene LinkOut

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