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Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837039, updated on 18-Sep-2024

Summary

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Official Full Name
Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein
Primary source
TAIR:AT1G05380
Locus tag
AT1G05380
See related
Araport:AT1G05380
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T25N20.3; T25N20_3
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Sequence:
Chromosome: 1; NC_003070.9 (1576822..1582672)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene vacuole membrane-like protein Neighboring gene Sec14p-like phosphatidylinositol transfer family protein Neighboring gene tRNA-Asn Neighboring gene photosystem II 11 kDa protein-like protein Neighboring gene uncharacterized protein Neighboring gene CDPK adapter, putative (DUF1423)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. dMi-2, a hunchback-interacting protein that functions in polycomb repression. Kehle J, et al. Science, 1998 Dec 4. PMID 9836641
  2. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219
  3. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Taylor-Teeples M, et al. Nature, 2015 Jan 29. PMID 25533953, Free PMC Article
  4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_001123761.2
NM_001331546.1
NM_100417.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IC
Inferred by Curator
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein
NP_001117233.1
  • Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (TAIR:AT4G14920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_563736.3
  • Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (TAIR:AT4G14920.1); Has 4682 Blast hits to 3960 proteins in 222 species: Archae - 3; Bacteria - 7; Metazoa - 2969; Fungi - 456; Plants - 787; Viruses - 0; Other Eukaryotes - 460 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1576822..1582672
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001123761.2 → NP_001117233.1  Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001117233.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WBE1, Q9ZW00
    Conserved Domains (4) summary
    cd04301
    Location:821 → 880
    NAT_SF; N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate
    smart00249
    Location:668 → 724
    PHD; PHD zinc finger
    cd15532
    Location:628 → 667
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    pfam16135
    Location:513 → 587
    Jas; TPL-binding domain in jasmonate signalling

  2. NM_001331546.1 → NP_001322107.1  Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WBE1, Q9ZW00

  3. NM_100417.5 → NP_563736.3  Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563736.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WBE1, Q9ZW00
    Conserved Domains (4) summary
    cd04301
    Location:821 → 880
    NAT_SF; N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate
    smart00249
    Location:668 → 724
    PHD; PHD zinc finger
    cd15532
    Location:628 → 667
    PHD2_CHD_II; PHD finger 2 found in class II Chromodomain-Helicase-DNA binding (CHD) proteins
    pfam16135
    Location:513 → 587
    Jas; TPL-binding domain in jasmonate signalling
Nucleotide Protein
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