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ZIP5 zinc transporter 5 precursor [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837029, updated on 18-Sep-2024

Summary

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Official Symbol
ZIP5
Official Full Name
zinc transporter 5 precursor
Primary source
TAIR:AT1G05300
Locus tag
AT1G05300
See related
Araport:AT1G05300
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
YUP8H12.8; YUP8H12_8; zinc transporter 5 precursor
Summary
member of Fe(II) transporter isolog family
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Genomic context

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See ZIP5 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (1544927..1547849, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Pectin lyase-like superfamily protein Neighboring gene myosin heavy chain, embryonic smooth protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic relationships within cation transporter families of Arabidopsis. Mäser P, et al. Plant Physiol, 2001 Aug. PMID 11500563, Free PMC Article
  2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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NM_100409.5
NM_202033.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables metal ion transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables zinc ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within monoatomic cation transmembrane transport ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
involved_in zinc ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
zinc transporter 5 precursor
NP_172022.1
  • zinc transporter 5 precursor (ZIP5); FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: response to zinc ion, cation transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: zinc transporter 3 precursor (TAIR:AT2G32270.1); Has 1970 Blast hits to 1847 proteins in 292 species: Archae - 0; Bacteria - 139; Metazoa - 489; Fungi - 625; Plants - 507; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).
NP_973762.1
  • zinc transporter 5 precursor (ZIP5); FUNCTIONS IN: cation transmembrane transporter activity, metal ion transmembrane transporter activity; INVOLVED IN: response to zinc ion, cation transport; LOCATED IN: endomembrane system, integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc/iron permease, fungal/plant (InterPro:IPR004698), Zinc/iron permease (InterPro:IPR003689); BEST Arabidopsis thaliana protein match is: zinc transporter 3 precursor (TAIR:AT2G32270.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1544927..1547849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100409.5 → NP_172022.1  zinc transporter 5 precursor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172022.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O23039, Q6ICX1
    UniProtKB/TrEMBL
    A0A178WFF7, A0A654E804
    Conserved Domains (1) summary
    TIGR00820
    Location:33 → 360
    zip; ZIP zinc/iron transport family

  2. NM_202033.1 → NP_973762.1  zinc transporter 5 precursor [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973762.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4I8P9
    Conserved Domains (1) summary
    cl00437
    Location:33 → 259
    Zip; ZIP Zinc transporter
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O23039.1

Gene LinkOut

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