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TraB family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 837027, updated on 18-Sep-2024

Summary

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Official Full Name
TraB family protein
Primary source
TAIR:AT1G05270
Locus tag
AT1G05270
See related
Araport:AT1G05270
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
YUP8H12.12; YUP8H12_12
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (1531641..1534767, complement)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Peroxidase superfamily protein Neighboring gene Peroxidase superfamily protein Neighboring gene ERV-F (C)1 provirus ancestral Env polyprotein, putative (DUF604) Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TraB family proteins are components of ER-mitochondrial contact sites and regulate ER-mitochondrial interactions and mitophagy. Li C, et al. Nat Commun, 2022 Sep 26. PMID 36163196, Free PMC Article
  2. Multiple lines of evidence localize signaling, morphology, and lipid biosynthesis machinery to the mitochondrial outer membrane of Arabidopsis. Duncan O, et al. Plant Physiol, 2011 Nov. PMID 21896887, Free PMC Article
  3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_100406.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mitochondrion-endoplasmic reticulum membrane tether activity IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitophagy IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial outer membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TraB family protein
NP_172019.3
  • TraB family protein; CONTAINS InterPro DOMAIN/s: Pheromone shutdown-related, TraB (InterPro:IPR002816); BEST Arabidopsis thaliana protein match is: TraB family protein (TAIR:AT2G32340.1); Has 779 Blast hits to 750 proteins in 262 species: Archae - 153; Bacteria - 256; Metazoa - 121; Fungi - 0; Plants - 106; Viruses - 0; Other Eukaryotes - 143 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    1531641..1534767 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_100406.5 → NP_172019.3  TraB family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_172019.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W1Q7, A0A654E8D8, Q8GXY6
    Conserved Domains (1) summary
    cd14726
    Location:111 → 324
    TraB_PrgY-like; TraB/PryY confer plasmid-borne pheromone resistance
Nucleotide Protein
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