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Chalcone-flavanone isomerase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836754, updated on 18-Sep-2024

Summary

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Official Full Name
Chalcone-flavanone isomerase family protein
Primary source
TAIR:AT5G66220
Locus tag
AT5G66220
See related
Araport:AT5G66220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K2A18.30; K2A18_30
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Genomic context

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Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (26461177..26462174)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene ferredoxin-NADP[+]-oxidoreductase 1 Neighboring gene armadillo repeat only 2 Neighboring gene calcium-dependent protein kinase 28 Neighboring gene Chalcone-flavanone isomerase family protein Neighboring gene miscRNA Neighboring gene Transducin/WD40 repeat-like superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Effects of ionizing radiation on a plant genome: analysis of two Arabidopsis transparent testa mutations. Shirley BW, et al. Plant Cell, 1992 Mar. PMID 1354004, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables chalcone isomerase activity IEA
Inferred from Electronic Annotation
more info
  
enables chalcone isomerase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Process Evidence Code Pubs
involved_in flavonoid biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within flavonoid biosynthetic process IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Chalcone-flavanone isomerase family protein
NP_201423.2
  • Chalcone-flavanone isomerase family protein; CONTAINS InterPro DOMAIN/s: Chalcone isomerase, subgroup (InterPro:IPR003466), Chalcone isomerase, 3-layer sandwich (InterPro:IPR016088), Chalcone isomerase (InterPro:IPR016087); BEST Arabidopsis thaliana protein match is: Chalcone-flavanone isomerase family protein (TAIR:AT5G66230.2); Has 378 Blast hits to 377 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 378; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    26461177..26462174
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126020.2 → NP_201423.2  Chalcone-flavanone isomerase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201423.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654GEI9
    Conserved Domains (1) summary
    cl03589
    Location:1 → 156
    Chalcone_3; Chalcone isomerase-like
Nucleotide Protein
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