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LARP1b winged-helix DNA-binding transcription factor family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836742, updated on 18-Sep-2024

Summary

Official Symbol
LARP1b
Official Full Name
winged-helix DNA-binding transcription factor family protein
Primary source
TAIR:AT5G66100
Locus tag
AT5G66100
See related
Araport:AT5G66100
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtLARP1b; K2A18.18; K2A18_18; La related protein 1b
Summary
Encodes a LAM domain containing protein that is involved in leaf senescence.
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Genomic context

See LARP1b in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (26427186..26430108)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Protein phosphatase 2C family protein Neighboring gene cell wall integrity/stress response component Neighboring gene Heavy metal transport/detoxification superfamily protein Neighboring gene 3-dehydroquinate synthase Neighboring gene RADIATION SENSITIVE 17 Neighboring gene proteasome alpha subunit D2

General gene information

NM_001345745.1
NM_126008.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding HDA PubMed 
enables mRNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within leaf senescence IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
 
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
winged-helix DNA-binding transcription factor family protein
NP_201411.2
  • winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G35890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    26427186..26430108
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126008.5NP_201411.2  winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201411.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8RWR2, Q9FKX2
    UniProtKB/TrEMBL
    A0A178UJQ0, A0A654GEH5
    Conserved Domains (1) summary
    cd07323
    Location:336409
    LAM; LA motif RNA-binding domain
  2. NM_001345745.1NP_001330746.1  winged-helix DNA-binding transcription factor family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BBS5