AKRP ankyrin repeat protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: AKRP
Official Full Name: ankyrin repeat protein
Primary source: TAIR:AT5G66055
Locus tag: AT5G66055
See related: Araport:AT5G66055
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ankyrin repeat protein; EMB16; EMB2036; EMBRYO DEFECTIVE 16; EMBRYO DEFECTIVE 2036
Summary: A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
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Genomic context

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See AKRP in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 7

Sequence:: Chromosome: 5; NC_003076.8 (26417156..26419363, complement)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Results lead to the conclusion that EMB506 and AKRP are involved in crucial and tightly controlled events in plastid differentiation linked to cell differentiation, morphogenesis and organogenesis during the plant life cycle. [AKRP]
Title: AKRP and EMB506 are two ankyrin repeat proteins essential for plastid differentiation and plant development in Arabidopsis.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_126003.3

Supported by ESTs:

NM_203271.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy	IMP Inferred from Mutant Phenotype more info
acts_upstream_of_or_within embryo development ending in seed dormancy	NAS Non-traceable Author Statement more info

Component	Evidence Code	Pubs
located_in chloroplast	IDA Inferred from Direct Assay more info	PubMed
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: ankyrin repeat protein

NP_569027.2

ankyrin repeat protein (AKRP); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT5G40160.1); Has 83523 Blast hits to 28077 proteins in 1268 species: Archae - 145; Bacteria - 7202; Metazoa - 43238; Fungi - 6726; Plants - 3393; Viruses - 1185; Other Eukaryotes - 21634 (source: NCBI BLink).

NP_975000.1

ankyrin repeat protein (AKRP); CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT5G40160.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

26417156..26419363 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_126003.3 → NP_569027.2 ankyrin repeat protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_569027.2

Status: REVIEWED

UniProtKB/Swiss-Prot

Q05753, Q3E852, Q8GYN6, Q940Y0

UniProtKB/TrEMBL

A0A5S9YHI4, A0A654GEL8, B9DF91

Conserved Domains (3) summary

PHA02876
Location:190 → 412

PHA02876; ankyrin repeat protein; Provisional

sd00045
Location:293 → 323

ANK; ANK repeat [structural motif]

pfam12796
Location:297 → 389

Ank_2; Ankyrin repeats (3 copies)
NM_203271.2 → NP_975000.1 ankyrin repeat protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_975000.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q05753

Conserved Domains (3) summary

cd00204
Location:263 → 359

ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...

pfam12796
Location:264 → 356

Ank_2; Ankyrin repeats (3 copies)

sd00045
Location:261 → 290

ANK; ANK repeat [structural motif]