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XTH6 xyloglucan endotransglucosylase/hydrolase 6 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836702, updated on 18-Sep-2024

Summary

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Official Symbol
XTH6
Official Full Name
xyloglucan endotransglucosylase/hydrolase 6
Primary source
TAIR:AT5G65730
Locus tag
AT5G65730
See related
Araport:AT5G65730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MPA24.8; MPA24_8; xyloglucan endotransglucosylase/hydrolase 6
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Genomic context

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See XTH6 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Sequence:
Chromosome: 5; NC_003076.8 (26298728..26300529)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene HAESA-like 2 Neighboring gene nitrogen fixation S (NIFS)-like 1 Neighboring gene zinc ion binding protein Neighboring gene 2-oxoglutarate dehydrogenase, E1 component Neighboring gene Serine carboxypeptidase S28 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The relationship of drought-related gene expression in Arabidopsis thaliana to hormonal and environmental factors. Huang D, et al. J Exp Bot, 2008. PMID 18552355, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_125970.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
  
enables polysaccharide binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to water deprivation IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
xyloglucan endotransglucosylase/hydrolase 6
NP_569019.1
  • xyloglucan endotransglucosylase/hydrolase 6 (XTH6); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: response to water deprivation; LOCATED IN: endomembrane system, cell wall, apoplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Glycoside hydrolase, family 16, active site (InterPro:IPR008263), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 7 (TAIR:AT4G37800.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    26298728..26300529
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125970.4 → NP_569019.1  xyloglucan endotransglucosylase/hydrolase 6 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_569019.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O49542, Q8LF99, Q93ZF8
    UniProtKB/TrEMBL
    A0A178UHJ4, A0A5S9YHI8, Q0WUU2
    Conserved Domains (1) summary
    cd02176
    Location:33 → 290
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LF99.2

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