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hydroxyproline-rich glycoprotein family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836692, updated on 18-Sep-2024

Summary

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Official Full Name
hydroxyproline-rich glycoprotein family protein
Primary source
TAIR:AT5G65660
Locus tag
AT5G65660
See related
Araport:AT5G65660
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K21L13.18; K21L13_18
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (26245134..26246960, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene beta HLH protein 93 Neighboring gene sugar transporter, putative (DUF1195) Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene indole-3-acetic acid inducible 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_125964.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
hydroxyproline-rich glycoprotein family protein
NP_569016.1
  • hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    26245134..26246960 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125964.2 → NP_569016.1  hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_569016.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LSK9
    UniProtKB/TrEMBL
    A0A5S9YHA1, A0A654GEQ8
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LSK9.1

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