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Pentatricopeptide repeat (PPR) superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836682, updated on 18-Sep-2024

Summary

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Official Full Name
Pentatricopeptide repeat (PPR) superfamily protein
Primary source
TAIR:AT5G65560
Locus tag
AT5G65560
See related
Araport:AT5G65560
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K21L13.7; K21L13_7
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (26200014..26203813, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene tRNA-Arg Neighboring gene transcription initiation factor TFIID subunit Neighboring gene ncRNA Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ncRNA Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001345697.1
NM_125954.6

Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pentatricopeptide repeat (PPR) superfamily protein
NP_201359.1
  • Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G77340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    26200014..26203813 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345698.1 → NP_001331860.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LSL9
    UniProtKB/TrEMBL
    A0A5S9YHA4, A0A654GFE7
    Conserved Domains (3) summary
    PLN03077
    Location:571 → 898
    PLN03077; Protein ECB2; Provisional
    PLN03218
    Location:321 → 679
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:464 → 491
    PPR; PPR repeat [structural motif]

  2. NM_125954.6 → NP_201359.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201359.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LSL9
    UniProtKB/TrEMBL
    A0A5S9YHA4, A0A654GFE7
    Conserved Domains (3) summary
    PLN03077
    Location:571 → 898
    PLN03077; Protein ECB2; Provisional
    PLN03218
    Location:321 → 679
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:464 → 491
    PPR; PPR repeat [structural motif]

  3. NM_001345697.1 → NP_001331859.1  Pentatricopeptide repeat (PPR) superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LSL9
    UniProtKB/TrEMBL
    A0A5S9YHA4, A0A654GFE7
    Conserved Domains (3) summary
    PLN03077
    Location:571 → 898
    PLN03077; Protein ECB2; Provisional
    PLN03218
    Location:321 → 679
    PLN03218; maturation of RBCL 1; Provisional
    sd00004
    Location:464 → 491
    PPR; PPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LSL9.1

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