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UBP17 ubiquitin-specific protease 17 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836670, updated on 18-Sep-2024

Summary

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Official Symbol
UBP17
Official Full Name
ubiquitin-specific protease 17
Primary source
TAIR:AT5G65450
Locus tag
AT5G65450
See related
Araport:AT5G65450
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MNA5.19; MNA5_19; ubiquitin-specific protease 17
Summary
Encodes a ubiquitin-specific protease.
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Genomic context

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See UBP17 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Sequence:
Chromosome: 5; NC_003076.8 (26157535..26161331)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene tRNA-Ser Neighboring gene kinesin like protein for actin based chloroplast movement 2 Neighboring gene O-fucosyltransferase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_125943.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ubiquitin-specific protease 17
NP_201348.1
  • ubiquitin-specific protease 17 (UBP17); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 16 (TAIR:AT4G24560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    26157535..26161331
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345687.1 → NP_001332735.1  ubiquitin-specific protease 17 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UCJ5, A0A1R7T3I4, A0A654GEC8
    Conserved Domains (2) summary
    cl02553
    Location:349 → 650
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    pfam01753
    Location:76 → 113
    zf-MYND; MYND finger

  2. NM_125943.2 → NP_201348.1  ubiquitin-specific protease 17 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201348.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FKP5
    UniProtKB/TrEMBL
    A0A178UCJ5
    Conserved Domains (3) summary
    cl02553
    Location:330 → 631
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    pfam00443
    Location:328 → 630
    UCH; Ubiquitin carboxyl-terminal hydrolase
    pfam01753
    Location:57 → 94
    zf-MYND; MYND finger
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FKP5.1

Gene LinkOut

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