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XYL4 beta-D-xylosidase 4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836578, updated on 18-Sep-2024

Summary

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Official Symbol
XYL4
Official Full Name
beta-D-xylosidase 4
Primary source
TAIR:AT5G64570
Locus tag
AT5G64570
See related
Araport:AT5G64570
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4; ATBXL4; beta-D-xylosidase 4; MUB3.9; MUB3_9
Summary
Encodes a beta-d-xylosidase that belongs to family 3 of glycoside hydrolases.
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Genomic context

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See XYL4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (25809975..25813648, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene loricrin-like protein Neighboring gene magnesium transporter 9 Neighboring gene ncRNA Neighboring gene AAA-type ATPase family protein Neighboring gene NYN domain protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cell wall-localized BETA-XYLOSIDASE4 contributes to immunity of Arabidopsis against Botrytis cinerea. Guzha A, et al. Plant Physiol, 2022 Jun 27. PMID 35485198, Free PMC Article
  2. Purification and characterization of enzymes exhibiting beta-D-xylosidase activities in stem tissues of Arabidopsis. Minic Z, et al. Plant Physiol, 2004 Jun. PMID 15181203, Free PMC Article
  3. Contrasting Roles of the Apoplastic Aspartyl Protease APOPLASTIC, ENHANCED DISEASE SUSCEPTIBILITY1-DEPENDENT1 and LEGUME LECTIN-LIKE PROTEIN1 in Arabidopsis Systemic Acquired Resistance. Breitenbach HH, et al. Plant Physiol, 2014 Jun. PMID 24755512, Free PMC Article
  4. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128
  5. Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID. Mair A, et al. Elife, 2019 Sep 19. PMID 31535972, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001345643.1
NM_001345644.1
NM_125853.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables alpha-L-arabinofuranosidase activity IGI
Inferred from Genetic Interaction
more info
 PubMed 
enables xylan 1,4-beta-xylosidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables xylan 1,4-beta-xylosidase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within defense response to fungus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within systemic acquired resistance IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within xylan catabolic process IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in xylan catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in apoplast HDA PubMed 
located_in apoplast IDA
Inferred from Direct Assay
more info
 PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in membrane HDA PubMed 
located_in plant-type cell wall HDA PubMed 

General protein information

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Preferred Names
beta-D-xylosidase 4
NP_201262.1
  • beta-D-xylosidase 4 (XYL4); FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: xylan catabolic process; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: beta-xylosidase 3 (TAIR:AT5G09730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    25809975..25813648 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125853.3 → NP_201262.1  beta-D-xylosidase 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201262.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q56WR7, Q9FLG1
    UniProtKB/TrEMBL
    A0A178UTL8, A0A5S9YH10, A0A654GF32
    Conserved Domains (1) summary
    PLN03080
    Location:23 → 784
    PLN03080; Probable beta-xylosidase; Provisional

  2. NM_001345643.1 → NP_001331902.1  beta-D-xylosidase 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BF93, A0A7G2FPX9

  3. NM_001345644.1 → NP_001331903.1  beta-D-xylosidase 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BFA0
    Conserved Domains (1) summary
    PLN03080
    Location:23 → 592
    PLN03080; Probable beta-xylosidase; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FLG1.1

Gene LinkOut

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