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NYN domain protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836566, updated on 18-Sep-2024

Summary

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Official Full Name
NYN domain protein
Primary source
TAIR:AT5G64450
Locus tag
AT5G64450
See related
Araport:AT5G64450
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T12B11.4; T12B11_4
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Genomic context

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Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (25771949..25772761)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene fatty acid amide hydrolase Neighboring gene ncRNA Neighboring gene Phosphoglycerate mutase family protein Neighboring gene trichome birefringence-like protein (DUF828)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA nuclease activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
NYN domain protein
NP_201250.1
  • BEST Arabidopsis thaliana protein match is: Putative endonuclease or glycosyl hydrolase (TAIR:AT3G62200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    25771949..25772761
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125841.1 → NP_201250.1  NYN domain protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201250.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178U7Q5, A0A654GDY7, Q9FGF1
    Conserved Domains (1) summary
    cl28905
    Location:34 → 131
    PIN_SF; PIN (PilT N terminus) domain: Superfamily
Nucleotide Protein
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