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Aldolase-type TIM barrel family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836546, updated on 18-Sep-2024

Summary

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Official Full Name
Aldolase-type TIM barrel family protein
Primary source
TAIR:AT5G64250
Locus tag
AT5G64250
See related
Araport:AT5G64250
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MSJ1.9; MSJ1_9
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (25697354..25699255, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene 1,8-cineole synthase Neighboring gene miscRNA Neighboring gene metacaspase 3 Neighboring gene EXORDIUM like 2 Neighboring gene splicing factor Neighboring gene dicarboxylate transporter 2.2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A leucine-rich repeat protein is required for growth promotion and enhanced seed production mediated by the endophytic fungus Piriformospora indica in Arabidopsis thaliana. Shahollari B, et al. Plant J, 2007 Apr. PMID 17397506
  2. Proteome changes in Arabidopsis thaliana roots upon exposure to Cd2+. Roth U, et al. J Exp Bot, 2006. PMID 17075075
  3. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_125821.5
NM_180932.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables nitronate monooxygenase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within response to cadmium ion IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to symbiotic fungus IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Aldolase-type TIM barrel family protein
NP_568988.2
  • Aldolase-type TIM barrel family protein; FUNCTIONS IN: oxidoreductase activity, catalytic activity, nitronate monooxygenase activity; INVOLVED IN: response to cadmium ion, response to symbiotic fungus, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), 2-nitropropane dioxygenase, NPD (InterPro:IPR004136); Has 10497 Blast hits to 10450 proteins in 2031 species: Archae - 24; Bacteria - 7204; Metazoa - 23; Fungi - 537; Plants - 70; Viruses - 0; Other Eukaryotes - 2639 (source: NCBI BLink).
NP_851263.1
  • Aldolase-type TIM barrel family protein; FUNCTIONS IN: oxidoreductase activity, catalytic activity, nitronate monooxygenase activity; INVOLVED IN: response to cadmium ion, response to symbiotic fungus, metabolic process; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), 2-nitropropane dioxygenase, NPD (InterPro:IPR004136); Has 10289 Blast hits to 10274 proteins in 2024 species: Archae - 22; Bacteria - 7122; Metazoa - 23; Fungi - 533; Plants - 70; Viruses - 0; Other Eukaryotes - 2519 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    25697354..25699255 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125821.5 → NP_568988.2  Aldolase-type TIM barrel family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568988.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654GDX4, A0A7G2FML6, Q9FMG0
    Conserved Domains (1) summary
    cd04730
    Location:8 → 232
    NPD_like; 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase ...

  2. NM_180932.2 → NP_851263.1  Aldolase-type TIM barrel family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851263.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2FML6, Q8LDF2
    Conserved Domains (2) summary
    COG2070
    Location:6 → 283
    YrpB; NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family [General function prediction only]
    cd04730
    Location:6 → 192
    NPD_like; 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase ...
Nucleotide Protein
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