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Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domain [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836543, updated on 18-Sep-2024

Summary

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Official Full Name
Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domain
Primary source
TAIR:AT5G64220
Locus tag
AT5G64220
See related
Araport:AT5G64220
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
calmodulin-binding transcription activator 2; CAMTA2; MSJ1.6; MSJ1_6
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Genomic context

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Location:
chromosome: 5
Exon count:
13
Sequence:
Chromosome: 5; NC_003076.8 (25686193..25692339)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene neuronal PAS domain protein Neighboring gene serine/arginine-rich splicing factor-like protein, putative Neighboring gene alternative oxidase 2 Neighboring gene 1,8-cineole synthase Neighboring gene miscRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Kidokoro S, et al. Plant Cell, 2017 Apr. PMID 28351986, Free PMC Article
  2. SENSITIVE TO PROTON RHIZOTOXICITY1, CALMODULIN BINDING TRANSCRIPTION ACTIVATOR2, and other transcription factors are involved in ALUMINUM-ACTIVATED MALATE TRANSPORTER1 expression. Tokizawa M, et al. Plant Physiol, 2015 Mar. PMID 25627216, Free PMC Article
  3. Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana. Jones AM, et al. J Proteomics, 2009 Apr 13. PMID 19245862
  4. Roles of CAMTA transcription factors and salicylic acid in configuring the low-temperature transcriptome and freezing tolerance of Arabidopsis. Kim Y, et al. Plant J, 2013 Aug. PMID 23581962
  5. A calmodulin-binding/CGCG box DNA-binding protein family involved in multiple signaling pathways in plants. Yang T, et al. J Biol Chem, 2002 Nov 22. PMID 12218065

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR2 was found to be an activator of AtALMT1 expression.[CAMTA2]
    Title: SENSITIVE TO PROTON RHIZOTOXICITY1, CALMODULIN BINDING TRANSCRIPTION ACTIVATOR2, and other transcription factors are involved in ALUMINUM-ACTIVATED MALATE TRANSPORTER1 expression.
  2. CAMTA1, CAMTA2 and CAMTA3 function together to inhibit salicylic acid biosynthesis at warm temperature (22 degrees C). CAMTA1, CAMTA2 and CAMTA3 function together to positively regulate CBF1, CBF2 and CBF3 and freezing tolerance. [CAMTA2]
    Title: Roles of CAMTA transcription factors and salicylic acid in configuring the low-temperature transcriptome and freezing tolerance of Arabidopsis.
Submit: New GeneRIF Correction

General gene information

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NM_001037058.2
NM_125818.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to aluminum ion IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within positive regulation of DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within response to cold IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domain
NP_001032135.1
  • Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains; FUNCTIONS IN: calmodulin binding, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), Ankyrin repeat (InterPro:IPR002110), IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: ethylene induced calmodulin binding protein (TAIR:AT5G09410.2); Has 14537 Blast hits to 9093 proteins in 523 species: Archae - 46; Bacteria - 905; Metazoa - 8300; Fungi - 946; Plants - 937; Viruses - 67; Other Eukaryotes - 3336 (source: NCBI BLink).
NP_201227.3
  • Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains; FUNCTIONS IN: calmodulin binding, transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), CG-1 (InterPro:IPR005559), IQ calmodulin-binding region (InterPro:IPR000048), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: ethylene induced calmodulin binding protein (TAIR:AT5G09410.2); Has 14517 Blast hits to 9081 proteins in 522 species: Archae - 46; Bacteria - 904; Metazoa - 8296; Fungi - 946; Plants - 937; Viruses - 67; Other Eukaryotes - 3321 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    25686193..25692339
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001037058.2 → NP_001032135.1  Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domain [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001032135.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WNN4, Q6NPP4, Q9FMG3
    UniProtKB/TrEMBL
    A0A178UNU6, A0A5S9YH26, A0A7G2FKE6
    Conserved Domains (5) summary
    smart00015
    Location:893 → 914
    IQ; Calmodulin-binding motif
    COG0666
    Location:598 → 763
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:661 → 692
    ANK; ANK repeat [structural motif]
    pfam03859
    Location:23 → 135
    CG-1; CG-1 domain
    pfam12796
    Location:641 → 720
    Ank_2; Ankyrin repeats (3 copies)

  2. NM_125818.3 → NP_201227.3  Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domain [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201227.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q0WNN4, Q6NPP4, Q9FMG3
    UniProtKB/TrEMBL
    A0A178UNU6, A0A5S9YH26, A0A7G2FKE6
    Conserved Domains (5) summary
    smart00015
    Location:893 → 914
    IQ; Calmodulin-binding motif
    COG0666
    Location:598 → 763
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:661 → 692
    ANK; ANK repeat [structural motif]
    pfam03859
    Location:23 → 135
    CG-1; CG-1 domain
    pfam12796
    Location:641 → 720
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NPP4.1

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