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U2 small nuclear ribonucleoprotein auxiliary factor-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836522, updated on 18-Sep-2024

Summary

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Official Full Name
U2 small nuclear ribonucleoprotein auxiliary factor-like protein
Primary source
TAIR:AT5G64010
Locus tag
AT5G64010
See related
Araport:AT5G64010
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MBM17.11; MBM17_11
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (25618606..25620223, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SAL1 phosphatase-like protein Neighboring gene Inositol monophosphatase family protein Neighboring gene ncRNA Neighboring gene Inositol monophosphatase family protein Neighboring gene TRICHOME BIREFRINGENCE-LIKE 14 Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SIZ1 deficiency causes reduced stomatal aperture and enhanced drought tolerance via controlling salicylic acid-induced accumulation of reactive oxygen species in Arabidopsis. Miura K, et al. Plant J, 2013 Jan. PMID 22963672
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_125797.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within response to water deprivation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within stomatal closure IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
U2 small nuclear ribonucleoprotein auxiliary factor-like protein
NP_201206.3
  • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    25618606..25620223 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125797.5 → NP_201206.3  U2 small nuclear ribonucleoprotein auxiliary factor-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201206.3

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UFV1, A0A654GDS9, F4KC77, Q84WR7
Nucleotide Protein
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