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CHR24 chromatin remodeling 24 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836516, updated on 18-Sep-2024

Summary

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Official Symbol
CHR24
Official Full Name
chromatin remodeling 24
Primary source
TAIR:AT5G63950
Locus tag
AT5G63950
See related
Araport:AT5G63950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
chromatin remodeling 24; ERCC6; MBM17.5; MBM17_5; RAD26
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Genomic context

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See CHR24 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
22
Sequence:
Chromosome: 5; NC_003076.8 (25591956..25598671, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene kinase with adenine nucleotide alpha hydrolases-like domain-containing protein Neighboring gene miscRNA Neighboring gene DNA polymerase delta subunit 1 Neighboring gene Copine (Calcium-dependent phospholipid-binding protein) family Neighboring gene SAL1 phosphatase-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A transient assay for recombination demonstrates that Arabidopsis SNM1 and XRCC3 enhance non-homologous recombination. Johnson RA, et al. Genet Mol Res, 2011 Sep 16. PMID 21968679
  2. The chromatin remodeler ERCC6 and the histone chaperone NAP1 are involved in apurinic/apyrimidinic endonuclease-mediated DNA repair. Fan T, et al. Plant Cell, 2024 May 29. PMID 38367203, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001345616.1
NM_125791.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP-dependent activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within chromatin remodeling IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in positive regulation of mitotic recombination IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
chromatin remodeling 24
NP_201200.2
  • chromatin remodeling 24 (CHR24); FUNCTIONS IN: helicase activity, DNA binding, nucleic acid binding, ATP binding; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 8 (TAIR:AT2G18760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    25591956..25598671 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125791.3 → NP_201200.2  chromatin remodeling 24 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201200.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8W103, Q9LVN8
    UniProtKB/TrEMBL
    A0A178UML0, A0A654GDT8
    Conserved Domains (3) summary
    cd00046
    Location:396 → 546
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:380 → 683
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:731 → 845
    Helicase_C; Helicase conserved C-terminal domain

  2. NM_001345616.1 → NP_001332133.1  chromatin remodeling 24 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UML0, A0A1P8BG17
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8W103.1

Gene LinkOut

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