U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SAP domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836465, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Full Name
SAP domain-containing protein
Primary source
TAIR:AT5G63460
Locus tag
AT5G63460
See related
Araport:AT5G63460
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MLE2.9; MLE2_9
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (25413286..25415592, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF167) Neighboring gene cytochrome P450, family 94, subfamily B, polypeptide 1 Neighboring gene nuclear factor Y, subunit C4 Neighboring gene mediator of RNA polymerase II transcription subunit Neighboring gene CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. LOWER TEMPERATURE 1 Enhances ABA Responses and Plant Drought Tolerance by Modulating the Stability and Localization of C2-Domain ABA-Related Proteins in Arabidopsis. Qin T, et al. Mol Plant, 2019 Sep 2. PMID 31102784
  2. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_001203677.1
NM_203257.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of response to water deprivation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of protein stability IPI
Inferred from Physical Interaction
more info
 PubMed 
involved_in response to abscisic acid IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to water deprivation IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to water deprivation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
SAP domain-containing protein
NP_001190606.1
  • SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276).
NP_001190607.1
  • SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276).
NP_201151.2
  • SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_974986.1
  • SAP domain-containing protein; FUNCTIONS IN: DNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: DNA-binding SAP (InterPro:IPR003034), Ubiquitin ligase, Det1/DDB1-complexing (InterPro:IPR018276); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    25413286..25415592 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125741.5 → NP_201151.2  SAP domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201151.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4KAQ0, Q6IDA6, Q9FMV6
    UniProtKB/TrEMBL
    A0A178UIX2, A0A7G2FJG2
    Conserved Domains (3) summary
    PLN03124
    Location:82 → 161
    PLN03124; poly [ADP-ribose] polymerase; Provisional
    pfam02037
    Location:128 → 161
    SAP; SAP domain
    pfam10172
    Location:18 → 76
    DDA1; Det1 complexing ubiquitin ligase

  2. NM_001203678.1 → NP_001190607.1  SAP domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190607.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4KAP9
    Conserved Domains (2) summary
    pfam02037
    Location:65 → 98
    SAP; SAP domain
    pfam10172
    Location:18 → 55
    DDA1; Det1 complexing ubiquitin ligase

  3. NM_001203677.1 → NP_001190606.1  SAP domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190606.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2FJG2, F4KAQ2
    Conserved Domains (2) summary
    pfam02037
    Location:140 → 173
    SAP; SAP domain
    pfam10172
    Location:18 → 88
    DDA1; Det1 complexing ubiquitin ligase

  4. NM_203257.2 → NP_974986.1  SAP domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974986.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7G2FJG2
    Conserved Domains (2) summary
    pfam02037
    Location:127 → 160
    SAP; SAP domain
    pfam10172
    Location:18 → 76
    DDA1; Det1 complexing ubiquitin ligase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6IDA6.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools