hypothetical protein (DUF167) [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Full Name: hypothetical protein (DUF167)
Primary source: TAIR:AT5G63440
Locus tag: AT5G63440
See related: Araport:AT5G63440
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: MLE2.7; MLE2_7
Summary: Encodes a protein that is conserved in eukaryotes. In vitro, it interacts with CACTIN.
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Genomic context

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See in Genome Data Viewer

Location:: chromosome: 5

Exon count:: 7

Sequence:: Chromosome: 5; NC_003076.8 (25406252..25408456)

Chromosome 5 - NC_003076.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The study suggests that CSU4 acts as a negative regulator of CCA1 via physically associating with CCA1, which in turn, likely serves to repress expression of CCA1 and PIF4 to promote photomorphogenesis. [CSU4]
Title: COP1 SUPPRESSOR 4 promotes seedling photomorphogenesis by repressing CCA1 and PIF4 expression in Arabidopsis.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001085320.1

Supported by ESTs:

NM_125739.4

Supported by ESTs:

NM_180925.2

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within circadian regulation of translation	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within photomorphogenesis	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within positive regulation of photomorphogenesis	IGI Inferred from Genetic Interaction more info	PubMed
acts_upstream_of_or_within positive regulation of photomorphogenesis	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: hypothetical protein (DUF167)

NP_001078789.1

Protein of unknown function (DUF167); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF167 (InterPro:IPR003746); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF167) (TAIR:AT1G49170.1); Has 732 Blast hits to 732 proteins in 300 species: Archae - 13; Bacteria - 428; Metazoa - 192; Fungi - 6; Plants - 66; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).

NP_568972.2

Protein of unknown function (DUF167); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF167 (InterPro:IPR003746); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF167) (TAIR:AT1G49170.1); Has 813 Blast hits to 813 proteins in 317 species: Archae - 13; Bacteria - 428; Metazoa - 238; Fungi - 12; Plants - 68; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).

NP_851256.1

Protein of unknown function (DUF167); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF167 (InterPro:IPR003746); Has 297 Blast hits to 297 proteins in 98 species: Archae - 0; Bacteria - 8; Metazoa - 181; Fungi - 12; Plants - 60; Viruses - 0; Other Eukaryotes - 36 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003076.8 Reference assembly

Range

25406252..25408456

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_125739.4 → NP_568972.2 hypothetical protein (DUF167) [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_568972.2

Status: REVIEWED

UniProtKB/Swiss-Prot

A8MRN7, Q8GWQ6, Q944I0, Q9FMV8

UniProtKB/TrEMBL

A0A178U7M9, A0A5S9YGL8, A0A7G2FII0

Conserved Domains (1) summary

pfam02594
Location:144 → 215

DUF167; Uncharacterized ACR, YggU family COG1872
NM_180925.2 → NP_851256.1 hypothetical protein (DUF167) [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_851256.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q8GWQ6

Conserved Domains (1) summary

pfam02594
Location:146 → 191

DUF167; uncharacterized ACR, YggU family COG1872
NM_001085320.1 → NP_001078789.1 hypothetical protein (DUF167) [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001078789.1

Status: REVIEWED

UniProtKB/TrEMBL

A0A7G2FII0, A0A7G2FK97

Conserved Domains (1) summary

pfam02594
Location:125 → 196

DUF167; Uncharacterized ACR, YggU family COG1872