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Carbohydrate-binding X8 domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836445, updated on 18-Sep-2024

Summary

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Official Full Name
Carbohydrate-binding X8 domain superfamily protein
Primary source
TAIR:AT5G63250
Locus tag
AT5G63250
See related
Araport:AT5G63250
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MDC12.22; MDC12_22
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (25360121..25360695, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene Zinc finger C-x8-C-x5-C-x3-H type family protein Neighboring gene RPM1-interacting protein 4 (RIN4) family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in plasma membrane ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Carbohydrate-binding X8 domain superfamily protein
NP_201130.1
  • Carbohydrate-binding X8 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT5G63240.1); Has 1382 Blast hits to 1334 proteins in 46 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 13; Plants - 1368; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    25360121..25360695 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125720.3 → NP_201130.1  Carbohydrate-binding X8 domain superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201130.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UQJ1, A0A5S9YGU3, A0A654GDK3, Q9FMJ8
    Conserved Domains (1) summary
    smart00768
    Location:42 → 128
    X8; Possibly involved in carbohydrate binding
Nucleotide Protein
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