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RNA polymerase II, Rpb4, core protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836415, updated on 18-Sep-2024

Summary

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Official Full Name
RNA polymerase II, Rpb4, core protein
Primary source
TAIR:AT5G62950
Locus tag
AT5G62950
See related
Araport:AT5G62950
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MQB2.27; MQB2_27
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (25262162..25264053, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene SGNH hydrolase-type esterase superfamily protein Neighboring gene Dof-type zinc finger DNA-binding family protein Neighboring gene ncRNA Neighboring gene UDP-N-acetylglucosamine-N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001085314.1
NM_001203673.2
NM_001345569.1
NM_001345570.1
NM_001345571.1
NM_125689.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase III promoter IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
  
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNA polymerase II, Rpb4, core protein
NP_001078783.1
  • RNA polymerase II, Rpb4, core protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, nucleotide binding, catalytic activity; INVOLVED IN: cellular metabolic process, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT3G28956.1); Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 78; Fungi - 4; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
NP_001190602.1
  • RNA polymerase II, Rpb4, core protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, catalytic activity, nucleotide binding; INVOLVED IN: cellular metabolic process, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT3G28956.1).
NP_201100.1
  • RNA polymerase II, Rpb4, core protein; FUNCTIONS IN: DNA-directed RNA polymerase activity, catalytic activity, nucleotide binding; INVOLVED IN: cellular metabolic process, transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HRDC-like (InterPro:IPR010997), RNA polymerase II, Rpb4 (InterPro:IPR005574), RNA polymerase II, Rpb4, core (InterPro:IPR006590); BEST Arabidopsis thaliana protein match is: RNA polymerase II, Rpb4, core protein (TAIR:AT3G28956.1); Has 213 Blast hits to 213 proteins in 94 species: Archae - 0; Bacteria - 0; Metazoa - 128; Fungi - 38; Plants - 39; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    25262162..25264053 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345568.1 → NP_001332449.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UN77, A0A384KRS8, A0A5S9YHP5, Q7XJ61
    Conserved Domains (1) summary
    smart00657
    Location:4 → 122
    RPOL4c; DNA-directed RNA-polymerase II subunit

  2. NM_001203673.2 → NP_001190602.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190602.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UN77, A0A384KRS8, A0A5S9YHP5, Q7XJ61
    Conserved Domains (1) summary
    smart00657
    Location:4 → 122
    RPOL4c; DNA-directed RNA-polymerase II subunit

  3. NM_001345570.1 → NP_001332451.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V6I2, A0A1P8BGY7
    Conserved Domains (1) summary
    cl00638
    Location:4 → 93
    RNA_pol_Rpb4; RNA polymerase Rpb4

  4. NM_001345569.1 → NP_001332450.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V6I2, A0A1P8BGY7
    Conserved Domains (1) summary
    cl00638
    Location:4 → 93
    RNA_pol_Rpb4; RNA polymerase Rpb4

  5. NM_001345571.1 → NP_001332448.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UN77, A0A384KRS8, A0A5S9YHP5, Q7XJ61
    Conserved Domains (1) summary
    smart00657
    Location:4 → 122
    RPOL4c; DNA-directed RNA-polymerase II subunit

  6. NM_125689.5 → NP_201100.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201100.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UN77, A0A384KRS8, A0A5S9YHP5, Q7XJ61
    Conserved Domains (1) summary
    smart00657
    Location:4 → 122
    RPOL4c; DNA-directed RNA-polymerase II subunit

  7. NM_001085314.1 → NP_001078783.1  RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078783.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V6I2, A8MS47
    Conserved Domains (1) summary
    cl00638
    Location:4 → 99
    RNA_pol_Rpb4; RNA polymerase Rpb4
Nucleotide Protein
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