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F-box and associated interaction domains-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836387, updated on 18-Sep-2024

Summary

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Official Full Name
F-box and associated interaction domains-containing protein
Primary source
TAIR:AT5G62660
Locus tag
AT5G62660
See related
Araport:AT5G62660
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MRG21.8; MRG21_8
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Genomic context

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Location:
chromosome: 5
Exon count:
1
Sequence:
Chromosome: 5; NC_003076.8 (25156326..25157465, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene proline-rich family protein Neighboring gene Tic22-like family protein Neighboring gene ncRNA Neighboring gene H[+]-ATPase 11 Neighboring gene Major facilitator superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
F-box and associated interaction domains-containing protein
NP_201072.1
  • F-box and associated interaction domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G62510.1); Has 1960 Blast hits to 1905 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1958; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    25156326..25157465 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125661.1 → NP_201072.1  F-box and associated interaction domains-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201072.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9LV12
    UniProtKB/TrEMBL
    A0A654GDJ7
    Conserved Domains (3) summary
    smart00256
    Location:41 → 75
    FBOX; A Receptor for Ubiquitination Targets
    TIGR01640
    Location:141 → 372
    F_box_assoc_1; F-box protein interaction domain
    pfam08268
    Location:245 → 370
    FBA_3; F-box associated domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9LV12.1

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