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ARM repeat superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836379, updated on 18-Sep-2024

Summary

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Official Full Name
ARM repeat superfamily protein
Primary source
TAIR:AT5G62580
Locus tag
AT5G62580
See related
Araport:AT5G62580
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
K19B1.19; K19B1_19
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (25119511..25122578)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Calmodulin binding protein-like protein Neighboring gene uncharacterized protein Neighboring gene succinate dehydrogenase subunit Neighboring gene ARM repeat superfamily protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Green sperm. Identification of male gamete promoters in Arabidopsis. Engel ML, et al. Plant Physiol, 2005 Aug. PMID 16055690, Free PMC Article
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The expression of VEX1 during pollen development is reported.
    Title: Green sperm. Identification of male gamete promoters in Arabidopsis.
Submit: New GeneRIF Correction

General gene information

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Homology

NM_001345554.1
NM_125653.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in microtubule IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ARM repeat superfamily protein
NP_001318866.1
  • ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HEAT (InterPro:IPR000357), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT1G27210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    25119511..25122578
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345554.1 → NP_001318866.1  ARM repeat superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6NPR6, Q8VYW3, Q9FJI8
    UniProtKB/TrEMBL
    A0A178URX0, A0A5S9YGL4
    Conserved Domains (1) summary
    sd00044
    Location:10 → 32
    HEAT; HEAT repeat [structural motif]

  2. NM_125653.4 → NP_201064.2  ARM repeat superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_201064.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q6NPR6, Q8VYW3, Q9FJI8
    UniProtKB/TrEMBL
    A0A178URX0, A0A5S9YGL4
    Conserved Domains (1) summary
    sd00044
    Location:10 → 32
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NPR6.1

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