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Calmodulin binding protein-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836377, updated on 18-Sep-2024

Summary

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Official Full Name
Calmodulin binding protein-like protein
Primary source
TAIR:AT5G62570
Locus tag
AT5G62570
See related
Araport:AT5G62570
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
calmodulin-binding protein 60a; CBP60a; K19B1.18; K19B1_18
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Genomic context

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Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (25113948..25117314)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme 3 Neighboring gene microtubule-associated futsch-like protein Neighboring gene RING/U-box superfamily protein with ARM repeat domain-containing protein Neighboring gene uncharacterized protein Neighboring gene succinate dehydrogenase subunit Neighboring gene ARM repeat superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The CALMODULIN-BINDING PROTEIN60 family includes both negative and positive regulators of plant immunity. Truman W, et al. Plant Physiol, 2013 Dec. PMID 24134885, Free PMC Article
  2. Genes encoding calmodulin-binding proteins in the Arabidopsis genome. Reddy VS, et al. J Biol Chem, 2002 Mar 22. PMID 11782485
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001203668.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calmodulin binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
  
enables calmodulin binding TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of defense response to bacterium IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Calmodulin binding protein-like protein
NP_001190597.1
  • Calmodulin binding protein-like; FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: Calmodulin-binding protein (TAIR:AT4G25800.2).
NP_001318865.1
  • Calmodulin binding protein-like; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: Calmodulin-binding protein (TAIR:AT4G25800.2); Has 287 Blast hits to 280 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 287; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    25113948..25117314
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345551.1 → NP_001331113.1  Calmodulin binding protein-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UPN9, A0A178UQ36, A0A1P8BCW0, A0A384L701

  2. NM_001345550.1 → NP_001318865.1  Calmodulin binding protein-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178URA5, A0A2H1ZEA0, A0A384L8C7
    Conserved Domains (1) summary
    pfam07887
    Location:86 → 376
    Calmodulin_bind; Calmodulin binding protein-like

  3. NM_001345552.1 → NP_001331112.1  Calmodulin binding protein-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BCW4

  4. NM_001203668.2 → NP_001190597.1  Calmodulin binding protein-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190597.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0SVV6, F4K6J3, Q8RWH0, Q9FJI9
    Conserved Domains (1) summary
    pfam07887
    Location:71 → 361
    Calmodulin_bind; Calmodulin binding protein-like
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
C0SVV6.1

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