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AGL42 AGAMOUS-like 42 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836337, updated on 18-Sep-2024

Summary

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Official Symbol
AGL42
Official Full Name
AGAMOUS-like 42
Primary source
TAIR:AT5G62165
Locus tag
AT5G62165
See related
Araport:AT5G62165
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AGAMOUS-like 42; FOREVER YOUNG FLOWER; FYF
Summary
Encodes a MADS box transcription factor. Expressed in quiescent center. Involved in floral transition.
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Genomic context

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See AGL42 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (24964646..24968607)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene zinc transporter 12 precursor Neighboring gene ncRNA Neighboring gene LOW protein: M-phase inducer phosphatase-like protein Neighboring gene carboxyesterase 20

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The MADS box gene, FOREVER YOUNG FLOWER, acts as a repressor controlling floral organ senescence and abscission in Arabidopsis. Chen MK, et al. Plant J, 2011 Oct. PMID 21689171
  2. The Arabidopsis SOC1-like genes AGL42, AGL71 and AGL72 promote flowering in the shoot apical and axillary meristems. Dorca-Fornell C, et al. Plant J, 2011 Sep. PMID 21609362
  3. Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. de Folter S, et al. Plant Cell, 2005 May. PMID 15805477, Free PMC Article
  4. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Parenicová L, et al. Plant Cell, 2003 Jul. PMID 12837945, Free PMC Article
  5. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. FYF controls floral senescence/abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA in Arabidopsis.
    Title: The MADS box gene, FOREVER YOUNG FLOWER, acts as a repressor controlling floral organ senescence and abscission in Arabidopsis.
  2. Role for AGL42 in the floral transition in the apical and axillary meristems.
    Title: The Arabidopsis SOC1-like genes AGL42, AGL71 and AGL72 promote flowering in the shoot apical and axillary meristems.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001037046.2
NM_001203664.2
NM_001203665.2
NM_001345528.1
NM_001345529.1
NM_001345530.1
NM_001345531.1
NM_001345532.1
NM_001345533.1
NM_001345534.1
NM_001345535.1
NM_125610.4
NM_180916.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within abscission IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within floral organ senescence IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within leaf senescence IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of flower development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
AGAMOUS-like 42
NP_001032123.1
  • AGAMOUS-like 42 (AGL42); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 20 (TAIR:AT2G45660.1); Has 7153 Blast hits to 7151 proteins in 910 species: Archae - 0; Bacteria - 11; Metazoa - 666; Fungi - 313; Plants - 6036; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).
NP_001190593.1
  • AGAMOUS-like 42 (AGL42); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 20 (TAIR:AT2G45660.1).
NP_001190594.1
  • AGAMOUS-like 42 (AGL42); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 71 (TAIR:AT5G51870.1).
NP_568952.1
  • AGAMOUS-like 42 (AGL42); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 20 (TAIR:AT2G45660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_851247.1
  • AGAMOUS-like 42 (AGL42); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 20 (TAIR:AT2G45660.1); Has 7152 Blast hits to 7150 proteins in 910 species: Archae - 0; Bacteria - 11; Metazoa - 666; Fungi - 313; Plants - 6035; Viruses - 0; Other Eukaryotes - 127 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24964646..24968607
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345536.1 → NP_001330228.1  AGAMOUS-like 42 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q0WRE2
    Conserved Domains (2) summary
    cd00265
    Location:3 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:82 → 147
    K-box; K-box region

  2. NM_001345537.1 → NP_001330229.1  AGAMOUS-like 42 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q0WRE2
    Conserved Domains (2) summary
    cd00265
    Location:3 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:82 → 147
    K-box; K-box region

  3. NM_001345538.1 → NP_001330220.1  AGAMOUS-like 42 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q0WRE2
    Conserved Domains (2) summary
    cd00265
    Location:3 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:82 → 147
    K-box; K-box region

  4. NM_001345539.1 → NP_001330227.1  AGAMOUS-like 42 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q0WRE2
    Conserved Domains (2) summary
    cd00265
    Location:3 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:82 → 147
    K-box; K-box region

  5. NM_125610.4 → NP_568952.1  AGAMOUS-like 42 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568952.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0Z253, Q9FIS1
    UniProtKB/TrEMBL
    A0A5S9YII9, A0A654GD96
    Conserved Domains (2) summary
    cd00265
    Location:3 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:82 → 170
    K-box; K-box region

  6. NM_001345528.1 → NP_001330222.1  AGAMOUS-like 42 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FIS1
    Conserved Domains (2) summary
    cd00265
    Location:3 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:82 → 156
    K-box; K-box region

  7. NM_001345529.1 → NP_001330224.1  AGAMOUS-like 42 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BA62

  8. NM_001345530.1 → NP_001330225.1  AGAMOUS-like 42 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BA62

  9. NM_001345531.1 → NP_001330226.1  AGAMOUS-like 42 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q0WRE2
    Conserved Domains (2) summary
    cd00265
    Location:3 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:82 → 147
    K-box; K-box region

  10. NM_001037046.2 → NP_001032123.1  AGAMOUS-like 42 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001032123.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0Z253, Q9FIS1
    UniProtKB/TrEMBL
    A0A5S9YII9, A0A654GD96
    Conserved Domains (2) summary
    cd00265
    Location:3 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:82 → 170
    K-box; K-box region

  11. NM_001203664.2 → NP_001190593.1  AGAMOUS-like 42 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190593.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FIS1
    Conserved Domains (2) summary
    cd00265
    Location:3 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:82 → 156
    K-box; K-box region

  12. NM_001345532.1 → NP_001330218.1  AGAMOUS-like 42 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BA41

  13. NM_001345533.1 → NP_001330219.1  AGAMOUS-like 42 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4K6E5

  14. NM_180916.1 → NP_851247.1  AGAMOUS-like 42 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851247.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0Z253, Q9FIS1
    UniProtKB/TrEMBL
    A0A5S9YII9, A0A654GD96
    Conserved Domains (2) summary
    cd00265
    Location:3 → 78
    MADS_MEF2_like; MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I ...
    pfam01486
    Location:82 → 170
    K-box; K-box region

  15. NM_001345534.1 → NP_001330223.1  AGAMOUS-like 42 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BA55

  16. NM_001203665.2 → NP_001190594.1  AGAMOUS-like 42 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001190594.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4K6E5
    Conserved Domains (1) summary
    pfam01486
    Location:56 → 117
    K-box; K-box region

  17. NM_001345535.1 → NP_001330221.1  AGAMOUS-like 42 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BA62
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FIS1.1

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