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APO3 APO RNA-binding protein (DUF794) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836314, updated on 18-Sep-2024

Summary

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Official Symbol
APO3
Official Full Name
APO RNA-binding protein (DUF794)
Primary source
TAIR:AT5G61930
Locus tag
AT5G61930
See related
Araport:AT5G61930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ACCUMULATION OF PHOTOSYSTEM ONE 3; K22G18.5; K22G18_5
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Genomic context

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See APO3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Sequence:
Chromosome: 5; NC_003076.8 (24865086..24868812, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene DCD (Development and Cell Death) domain protein Neighboring gene Calcium-dependent phospholipid-binding Copine family protein Neighboring gene FLX-like protein Neighboring gene Ubiquitin carboxyl-terminal hydrolase-related protein Neighboring gene Ubiquitin carboxyl-terminal hydrolase-related protein Neighboring gene MEI2-like protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001126003.1
NM_125586.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
APO RNA-binding protein (DUF794)
NP_001119475.1
  • ACCUMULATION OF PHOTOSYSTEM ONE 3 (APO3); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF794, plant (InterPro:IPR008512); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF794) (TAIR:AT1G64810.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_568945.2
  • ACCUMULATION OF PHOTOSYSTEM ONE 3 (APO3); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF794, plant (InterPro:IPR008512); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF794) (TAIR:AT1G64810.2); Has 145 Blast hits to 119 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24865086..24868812 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001126003.1 → NP_001119475.1  APO RNA-binding protein (DUF794) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119475.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94JX7, Q9FH50
    UniProtKB/TrEMBL
    A0A178UKG3, A0A5S9YGV4
    Conserved Domains (1) summary
    PLN00111
    Location:4 → 402
    PLN00111; accumulation of photosystem one; Provisional

  2. NM_125586.4 → NP_568945.2  APO RNA-binding protein (DUF794) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568945.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94JX7, Q9FH50
    UniProtKB/TrEMBL
    A0A178UKG3, A0A5S9YGV4
    Conserved Domains (1) summary
    PLN00111
    Location:4 → 402
    PLN00111; accumulation of photosystem one; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FH50.1

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