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FLX-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836313, updated on 18-Sep-2024

Summary

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Official Full Name
FLX-like protein
Primary source
TAIR:AT5G61920
Locus tag
AT5G61920
See related
Araport:AT5G61920
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
FLL4; FLOWERING LOCUS C EXPRESSOR-LIKE 4; FLX LIKE 4; FLX4; K22G18.4; K22G18_4
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (24864290..24866019)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene DCD (Development and Cell Death) domain protein Neighboring gene Calcium-dependent phospholipid-binding Copine family protein Neighboring gene APO RNA-binding protein (DUF794) Neighboring gene Ubiquitin carboxyl-terminal hydrolase-related protein Neighboring gene Ubiquitin carboxyl-terminal hydrolase-related protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis. Ding L, et al. Plant Physiol, 2013 Sep. PMID 23899645, Free PMC Article
  2. A Molecular switch for FLOWERING LOCUS C activation determines flowering time in Arabidopsis. Shen L, et al. Plant Cell, 2022 Feb 3. PMID 34850922, Free PMC Article
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A Molecular switch for FLOWERING LOCUS C activation determines flowering time in Arabidopsis.
    Title: A Molecular switch for FLOWERING LOCUS C activation determines flowering time in Arabidopsis.
  2. FLX-LIKE4 (FLX4) is a novel component of the FRI-C and is essential for the activation of FLC by FRI. FLX4 is required for basal levels of FLC expression in the absence of FRIGIDA. [FLX4]
    Title: FLOWERING LOCUS C EXPRESSOR family proteins regulate FLOWERING LOCUS C expression in both winter-annual and rapid-cycling Arabidopsis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001126002.2
NM_001345503.1
NM_001345504.1
NM_001345505.1
NM_001345506.1
NM_125585.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
FLX-like protein
NP_001119474.1
  • unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_200998.1
  • unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24864290..24866019
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001126002.2 → NP_001119474.1  FLX-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001119474.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FH51
    UniProtKB/TrEMBL
    A0A178USJ6, A0A5S9YG57, A0A7G2FIV9
    Conserved Domains (1) summary
    TIGR02168
    Location:42 → 234
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. NM_001345504.1 → NP_001331915.1  FLX-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BFA1, A0A7G2FIV9

  3. NM_001345503.1 → NP_001331917.1  FLX-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FH51
    UniProtKB/TrEMBL
    A0A178USJ6, A0A5S9YG57, A0A7G2FIV9
    Conserved Domains (1) summary
    TIGR02168
    Location:42 → 234
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  4. NM_001345505.1 → NP_001331916.1  FLX-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FH51
    UniProtKB/TrEMBL
    A0A178USJ6, A0A5S9YG57, A0A7G2FIV9
    Conserved Domains (1) summary
    TIGR02168
    Location:42 → 234
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  5. NM_125585.2 → NP_200998.1  FLX-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200998.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FH51
    UniProtKB/TrEMBL
    A0A178USJ6, A0A5S9YG57, A0A7G2FIV9
    Conserved Domains (1) summary
    TIGR02168
    Location:42 → 234
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  6. NM_001345506.1 → NP_001331914.1  FLX-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FH51
    UniProtKB/TrEMBL
    A0A178USJ6, A0A5S9YG57, A0A7G2FIV9
    Conserved Domains (1) summary
    TIGR02168
    Location:42 → 234
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FH51.1

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