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Protein Transporter, Pam16 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836309, updated on 18-Sep-2024

Summary

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Official Full Name
Protein Transporter, Pam16
Primary source
TAIR:AT5G61880
Locus tag
AT5G61880
See related
Araport:AT5G61880
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtPAM16L; MAC9.20; MAC9_20; PAM16L
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (24850211..24851803)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene floral meristem identity control protein LEAFY (LFY) Neighboring gene uncharacterized protein Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene DCD (Development and Cell Death) domain protein Neighboring gene Calcium-dependent phospholipid-binding Copine family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expansion of the evolutionarily conserved network of J-domain proteins in the Arabidopsis mitochondrial import complex. Tamadaddi C, et al. Plant Mol Biol, 2021 Mar. PMID 33206359
  2. Mitochondrial AtPAM16 is required for plant survival and the negative regulation of plant immunity. Huang Y, et al. Nat Commun, 2013. PMID 24153405
  3. Presequence translocase-associated motor subunits of the mitochondrial protein import apparatus are dual-targeted to mitochondria and plastids. Gill-Hille M, et al. Front Plant Sci, 2022. PMID 36438081, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Expansion of the evolutionarily conserved network of J-domain proteins in the Arabidopsis mitochondrial import complex.
    Title: Expansion of the evolutionarily conserved network of J-domain proteins in the Arabidopsis mitochondrial import complex.
  2. AtPAM16 seems to be involved in mitochondria-mediated plant immunity thus protecting plants from over-accumulation of reactive oxygen species and preventing autoimmunity.
    Title: Mitochondrial AtPAM16 is required for plant survival and the negative regulation of plant immunity.
Submit: New GeneRIF Correction

General gene information

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NM_125581.2
NM_180912.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of defense response IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in protein import into mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of TIM23 mitochondrial import inner membrane translocase complex IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrial inner membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Protein Transporter, Pam16
NP_568943.1
  • Protein Transporter, Pam16; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein Transporter, Pam16 (InterPro:IPR005341); BEST Arabidopsis thaliana protein match is: Protein Transporter, Pam16 (TAIR:AT3G59280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_851243.1
  • Protein Transporter, Pam16; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein Transporter, Pam16 (InterPro:IPR005341); BEST Arabidopsis thaliana protein match is: Protein Transporter, Pam16 (TAIR:AT3G59280.1); Has 384 Blast hits to 384 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 161; Fungi - 124; Plants - 79; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24850211..24851803
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345501.1 → NP_001331745.1  Protein Transporter, Pam16 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BEU0, A0A654GDL8
    Conserved Domains (1) summary
    cl02542
    Location:1 → 91
    DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...

  2. NM_180912.3 → NP_851243.1  Protein Transporter, Pam16 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851243.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93W66, Q9FLS3
    UniProtKB/TrEMBL
    A0A178UE84
    Conserved Domains (1) summary
    cl02542
    Location:1 → 102
    DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...

  3. NM_125581.2 → NP_568943.1  Protein Transporter, Pam16 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568943.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93W66, Q9FLS3
    UniProtKB/TrEMBL
    A0A178UE84
    Conserved Domains (1) summary
    cl02542
    Location:1 → 102
    DnaJ; DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q93W66.1

Gene LinkOut

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