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PPAN PETER PAN-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836299, updated on 18-Sep-2024

Summary

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Official Symbol
PPAN
Official Full Name
PETER PAN-like protein
Primary source
TAIR:AT5G61770
Locus tag
AT5G61770
See related
Araport:AT5G61770
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MAC9.8; MAC9_8; PETER PAN-like protein
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Genomic context

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See PPAN in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_003076.8 (24815541..24817728)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene RmlC-like cupins superfamily protein Neighboring gene inositol polyphosphate kinase 2 beta Neighboring gene TUDOR-SN protein 2 Neighboring gene calnexin 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Brix protein APPAN plays a role in ribosomal RNA processing in Arabidopsis. Choi I, et al. Plant Sci, 2023 Aug. PMID 37146691
  2. SNAIL1 is essential for female gametogenesis in Arabidopsis thaliana. Hao L, et al. J Integr Plant Biol, 2017 Sep. PMID 28776932
  3. A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis. Waidmann S, et al. Plant Cell, 2014 Nov. PMID 25387881, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_125571.5
NM_180911.2
NM_203247.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
  
involved_in rRNA processing IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within translation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
is_active_in nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleolus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
PETER PAN-like protein
NP_568939.2
  • PETER PAN-like protein (PPAN); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 1471 Blast hits to 1151 proteins in 223 species: Archae - 0; Bacteria - 34; Metazoa - 730; Fungi - 196; Plants - 73; Viruses - 37; Other Eukaryotes - 401 (source: NCBI BLink).
NP_851242.1
  • PETER PAN-like protein (PPAN); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 946 Blast hits to 859 proteins in 217 species: Archae - 0; Bacteria - 10; Metazoa - 449; Fungi - 173; Plants - 58; Viruses - 18; Other Eukaryotes - 238 (source: NCBI BLink).
NP_974976.1
  • PETER PAN-like protein (PPAN); CONTAINS InterPro DOMAIN/s: Brix domain (InterPro:IPR007109); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24815541..24817728
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125571.5 → NP_568939.2  PETER PAN-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568939.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178US73, A0A5S9YHB6, F4K3M1
    Conserved Domains (1) summary
    pfam04427
    Location:48 → 288
    Brix; Brix domain

  2. NM_180911.2 → NP_851242.1  PETER PAN-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851242.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ASU7, Q9FLT1
    UniProtKB/TrEMBL
    A0A178US73, A0A5S9YHB6
    Conserved Domains (1) summary
    pfam04427
    Location:48 → 288
    Brix; Brix domain

  3. NM_203247.1 → NP_974976.1  PETER PAN-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_974976.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178US73, A0A5S9YHB6, F4K3M1
    Conserved Domains (1) summary
    pfam04427
    Location:48 → 288
    Brix; Brix domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ASU7.1

Gene LinkOut

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