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ABCA12 ABC2 homolog 16 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836292, updated on 18-Sep-2024

Summary

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Official Symbol
ABCA12
Official Full Name
ABC2 homolog 16
Primary source
TAIR:AT5G61700
Locus tag
AT5G61700
See related
Araport:AT5G61700
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ABC2 homolog 16; ARABIDOPSIS THALIANA ABC2 HOMOLOG 16; ATATH16; ATH16; ATP-binding cassette A12; K11J9.11; K11J9_11
Summary
member of ATH subfamily
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Genomic context

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See ABCA12 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
15
Sequence:
Chromosome: 5; NC_003076.8 (24793779..24798745)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene orange protein Neighboring gene Pectin lyase-like superfamily protein Neighboring gene ABC2 homolog 15 Neighboring gene cotton fiber protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis thaliana ABC protein superfamily, a complete inventory. Sánchez-Fernández R, et al. J Biol Chem, 2001 Aug 10. PMID 11346655
  2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
  
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
  
enables ATPase-coupled transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables transmembrane transporter activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
ABC2 homolog 16
NP_001318859.1
  • ABC2 homolog 16 (ATH16); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 14 (TAIR:AT5G61740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24793779..24798745
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001345490.1 → NP_001332309.1  ABC2 homolog 16 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UKQ3, A0A1P8BGL8, A0A5S9YGT7, A0A654GDD2

  2. NM_001345491.1 → NP_001332310.1  ABC2 homolog 16 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UII2, A0A1P8BGL2

  3. NM_001345492.1 → NP_001332311.1  ABC2 homolog 16 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UKQ3, A0A1P8BGL8, A0A5S9YGT7, A0A654GDD2

  4. NM_001345489.1 → NP_001318859.1  ABC2 homolog 16 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4K3L4, Q9FLT8
    UniProtKB/TrEMBL
    A0A178UKQ3, A0A5S9YGT7
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FLT8.1

Gene LinkOut

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