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RPE D-ribulose-5-phosphate-3-epimerase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836262, updated on 18-Sep-2024

Summary

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Official Symbol
RPE
Official Full Name
D-ribulose-5-phosphate-3-epimerase
Primary source
TAIR:AT5G61410
Locus tag
AT5G61410
See related
Araport:AT5G61410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
D-ribulose-5-phosphate-3-epimerase; D-RIBULOSE-5-PHOSPHATE-3-EPIMERASE; EMB2728; EMBRYO DEFECTIVE 2728
Summary
Arabidopsis thaliana ribulose-5-phosphate-3-epimerase mRNA
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Genomic context

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See RPE in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Sequence:
Chromosome: 5; NC_003076.8 (24683606..24686217, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Polynucleotidyl transferase, ribonuclease H-like superfamily protein Neighboring gene Pentatricopeptide repeat (PPR) superfamily protein Neighboring gene uncharacterized protein Neighboring gene myb domain protein 28

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RPE, a plant gene involved in early developmental steps of nematode feeding cells. Favery B, et al. EMBO J, 1998 Dec 1. PMID 9843485, Free PMC Article
  2. The chloroplast lumen and stromal proteomes of Arabidopsis thaliana show differential sensitivity to short- and long-term exposure to low temperature. Goulas E, et al. Plant J, 2006 Sep. PMID 16923014
  3. High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. Giacomelli L, et al. Plant Physiol, 2006 Jun. PMID 16648217, Free PMC Article
  4. Redox Conformation-Specific Protein-Protein Interactions of the 2-Cysteine Peroxiredoxin in Arabidopsis. Liebthal M, et al. Antioxidants (Basel), 2020 Jun 11. PMID 32545358, Free PMC Article
  5. Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Bindschedler LV, et al. Phytochemistry, 2008 Jul. PMID 18538804

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_125534.4
NM_180909.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables D-ribulose-phosphate 3-epimerase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy NAS
Non-traceable Author Statement
more info
  
involved_in pentose-phosphate shunt IEA
Inferred from Electronic Annotation
more info
  
involved_in reductive pentose-phosphate cycle IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to cold IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to nematode IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast HDA PubMed 
located_in chloroplast HDA PubMed 
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 
located_in chloroplast stroma HDA PubMed 
located_in plastid HDA PubMed 
located_in stromule IDA
Inferred from Direct Assay
more info
 PubMed 
located_in thylakoid HDA PubMed 

General protein information

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Preferred Names
D-ribulose-5-phosphate-3-epimerase
NP_200949.1
  • D-ribulose-5-phosphate-3-epimerase (RPE); FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: response to cold, carbohydrate metabolic process, response to nematode, embryo development ending in seed dormancy; LOCATED IN: thylakoid, apoplast, stromule, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G01850.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
NP_851240.1
  • D-ribulose-5-phosphate-3-epimerase (RPE); FUNCTIONS IN: ribulose-phosphate 3-epimerase activity, catalytic activity; INVOLVED IN: response to cold, carbohydrate metabolic process, response to nematode, embryo development ending in seed dormancy; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Ribulose-phosphate 3-epimerase (InterPro:IPR000056), Ribulose-phosphate binding barrel (InterPro:IPR011060); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G01850.2); Has 9137 Blast hits to 9136 proteins in 2615 species: Archae - 52; Bacteria - 5574; Metazoa - 174; Fungi - 138; Plants - 190; Viruses - 0; Other Eukaryotes - 3009 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24683606..24686217 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180909.3 → NP_851240.1  D-ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851240.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0Z3J9, Q9SAU2
    UniProtKB/TrEMBL
    A0A178UPG9, A0A5S9YG86, A0A7G2FM12
    Conserved Domains (1) summary
    PLN02334
    Location:51 → 281
    PLN02334; ribulose-phosphate 3-epimerase

  2. NM_125534.4 → NP_200949.1  D-ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200949.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0Z3J9, Q9SAU2
    UniProtKB/TrEMBL
    A0A178UPG9, A0A5S9YG86, A0A7G2FM12
    Conserved Domains (1) summary
    PLN02334
    Location:51 → 281
    PLN02334; ribulose-phosphate 3-epimerase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SAU2.1

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