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histone deacetylase-related / HD-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836226, updated on 18-Sep-2024

Summary

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Official Full Name
histone deacetylase-related / HD-like protein
Primary source
TAIR:AT5G61050
Locus tag
AT5G61050
See related
Araport:AT5G61050
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MAF19.6; MAF19_6
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Genomic context

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Location:
chromosome: 5
Exon count:
5
Sequence:
Chromosome: 5; NC_003076.8 (24565482..24566615, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene exocyst subunit exo70 family protein E2 Neighboring gene evolutionarily conserved C-terminal region 3 Neighboring gene glycine-rich RNA-binding protein 3 Neighboring gene uncharacterized protein Neighboring gene histone deacetylase 5 Neighboring gene histone deacetylase of the RPD3/HDA1 superfamily 18

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
histone deacetylase-related / HD-like protein
NP_200913.1
  • histone deacetylase-related / HD-related; CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24565482..24566615 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125498.1 → NP_200913.1  histone deacetylase-related / HD-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200913.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UQ33, A0A5S9YG01, Q9FNQ9
Nucleotide Protein
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