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ECT3 evolutionarily conserved C-terminal region 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836223, updated on 18-Sep-2024

Summary

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Official Symbol
ECT3
Official Full Name
evolutionarily conserved C-terminal region 3
Primary source
TAIR:AT5G61020
Locus tag
AT5G61020
See related
Araport:AT5G61020
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
evolutionarily conserved C-terminal region 3; MAF19.3; MAF19_3
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Genomic context

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See ECT3 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Sequence:
Chromosome: 5; NC_003076.8 (24556994..24559936, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein Neighboring gene DEA(D/H)-box RNA helicase family protein Neighboring gene Replication factor-A protein 1-like protein Neighboring gene exocyst subunit exo70 family protein E2 Neighboring gene glycine-rich RNA-binding protein 3 Neighboring gene uncharacterized protein Neighboring gene histone deacetylase-related / HD-like protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The YTHDF proteins ECT2 and ECT3 bind largely overlapping target sets and influence target mRNA abundance, not alternative polyadenylation. Arribas-Hernández L, et al. Elife, 2021 Sep 30. PMID 34591013, Free PMC Article
  2. Plant YTHDF proteins are direct effectors of antiviral immunity against an N6-methyladenosine-containing RNA virus. Martínez-Pérez M, et al. EMBO J, 2023 Sep 18. PMID 37431920, Free PMC Article
  3. Recurrent requirement for the m(6)A-ECT2/ECT3/ECT4 axis in the control of cell proliferation during plant organogenesis. Arribas-Hernández L, et al. Development, 2020 Jul 24. PMID 32611605, Free PMC Article
  4. m(6)A readers ECT2/ECT3/ECT4 enhance mRNA stability through direct recruitment of the poly(A) binding proteins in Arabidopsis. Song P, et al. Genome Biol, 2023 Apr 30. PMID 37122016, Free PMC Article
  5. Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. Ito J, et al. J Proteome Res, 2011 Apr 1. PMID 21166475

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. m[6]A readers ECT2/ECT3/ECT4 enhance mRNA stability through direct recruitment of the poly(A) binding proteins in Arabidopsis.
    Title: m(6)A readers ECT2/ECT3/ECT4 enhance mRNA stability through direct recruitment of the poly(A) binding proteins in Arabidopsis.
  2. The YTHDF proteins ECT2 and ECT3 bind largely overlapping target sets and influence target mRNA abundance, not alternative polyadenylation.
    Title: The YTHDF proteins ECT2 and ECT3 bind largely overlapping target sets and influence target mRNA abundance, not alternative polyadenylation.
  3. Recurrent requirement for the m(6)A-ECT2/ECT3/ECT4 axis in the control of cell proliferation during plant organogenesis.
    Title: Recurrent requirement for the m(6)A-ECT2/ECT3/ECT4 axis in the control of cell proliferation during plant organogenesis.
Submit: New GeneRIF Correction

General gene information

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NM_125495.2
NM_180905.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA stabilization IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in response to abscisic acid IGI
Inferred from Genetic Interaction
more info
 PubMed 
involved_in response to virus IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
NOT located_in cytosol RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
evolutionarily conserved C-terminal region 3
NP_568932.2
  • evolutionarily conserved C-terminal region 3 (ECT3); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.1); Has 1114 Blast hits to 1097 proteins in 185 species: Archae - 0; Bacteria - 6; Metazoa - 492; Fungi - 144; Plants - 353; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).
NP_851236.1
  • evolutionarily conserved C-terminal region 3 (ECT3); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.4); Has 1118 Blast hits to 1101 proteins in 185 species: Archae - 0; Bacteria - 4; Metazoa - 492; Fungi - 150; Plants - 353; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24556994..24559936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180905.3 → NP_851236.1  evolutionarily conserved C-terminal region 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_851236.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4K1Z0, Q93ZP1, Q9FNR2
    UniProtKB/TrEMBL
    A0A178UM32, A0A7S8F255
    Conserved Domains (1) summary
    pfam04146
    Location:261 → 399
    YTH; YT521-B-like domain

  2. NM_125495.2 → NP_568932.2  evolutionarily conserved C-terminal region 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_568932.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UNW2, A0A7S8F255
    Conserved Domains (1) summary
    pfam04146
    Location:259 → 397
    YTH; YT521-B-like domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4K1Z0.1

Gene LinkOut

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