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Zinc finger (C3HC4-type RING finger) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836192, updated on 18-Sep-2024

Summary

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Official Full Name
Zinc finger (C3HC4-type RING finger) family protein
Primary source
TAIR:AT5G60710
Locus tag
AT5G60710
See related
Araport:AT5G60710
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MUP24.2; MUP24_2
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Genomic context

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Location:
chromosome: 5
Exon count:
2
Sequence:
Chromosome: 5; NC_003076.8 (24410581..24415145, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene transcription initiation factor TFIID subunit (Protein of unknown function, DUF584) Neighboring gene Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein Neighboring gene glycosyltransferase family protein 2 Neighboring gene ncRNA Neighboring gene electron transporter, putative (Protein of unknown function, DUF547)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_125464.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Zinc finger (C3HC4-type RING finger) family protein
NP_200879.1
  • Zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT2G38970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24410581..24415145 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125464.3 → NP_200879.1  Zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200879.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UB03, A0A654GCZ3, Q8L849, Q9FF49
    Conserved Domains (3) summary
    cd01466
    Location:251 → 419
    vWA_C3HC4_type; VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b ...
    cd16448
    Location:72 → 116
    RING-H2; H2 subclass of RING (RING-H2) finger and its variants
    pfam14624
    Location:600 → 671
    Vwaint; VWA / Hh protein intein-like
Nucleotide Protein
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