U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

GAF1 Polymerase/histidinol phosphatase-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836120, updated on 18-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
GAF1
Official Full Name
Polymerase/histidinol phosphatase-like protein
Primary source
TAIR:AT5G59980
Locus tag
AT5G59980
See related
Araport:AT5G59980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtRPP30; GAMETOPHYTE DEFECTIVE 1; MMN10.23; MMN10_23; RPP30
Summary
Encodes a predicted protein subunit of RNases P/MRP that plays a role in female gametophyte development and male competence.
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See GAF1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Sequence:
Chromosome: 5; NC_003076.8 (24147099..24149942)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene K-stimulated pyrophosphate-energized sodium pump protein Neighboring gene Histone superfamily protein Neighboring gene CCT motif family protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. SCARECROW-LIKE3 regulates the transcription of gibberellin-related genes by acting as a transcriptional co-repressor of GAI-ASSOCIATED FACTOR1. Ito T, et al. Plant Mol Biol, 2021 Mar. PMID 33474657
  2. GAMETOPHYTE DEFECTIVE 1, a putative subunit of RNases P/MRP, is essential for female gametogenesis and male competence in Arabidopsis. Wang SQ, et al. PLoS One, 2012. PMID 22509260, Free PMC Article
  3. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Fukazawa J, et al. Plant Cell, 2014 Jul. PMID 25035403, Free PMC Article
  4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. SCARECROW-LIKE3 regulates the transcription of gibberellin-related genes by acting as a transcriptional co-repressor of GAI-ASSOCIATED FACTOR1.
    Title: SCARECROW-LIKE3 regulates the transcription of gibberellin-related genes by acting as a transcriptional co-repressor of GAI-ASSOCIATED FACTOR1.
  2. Components of the RNases P/MRP family, such as RPP30, play important roles in gametophyte development and function in plants. [GAF1]
    Title: GAMETOPHYTE DEFECTIVE 1, a putative subunit of RNases P/MRP, is essential for female gametogenesis and male competence in Arabidopsis.
Submit: New GeneRIF Correction

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Markers

NM_001161317.2
NM_001345380.1
NM_001345381.1
NM_125391.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within embryo sac development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within pollen tube development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

Go to the top of the page Help
Preferred Names
Polymerase/histidinol phosphatase-like protein
NP_001154789.1
  • Polymerase/histidinol phosphatase-like; FUNCTIONS IN: tRNA-intron endonuclease activity, ribonuclease activity, catalytic activity; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: trichome; CONTAINS InterPro DOMAIN/s: Polymerase/histidinol phosphatase-like (InterPro:IPR016195), RNase P subunit p30 (InterPro:IPR002738); Has 1908 Blast hits to 1535 proteins in 339 species: Archae - 16; Bacteria - 381; Metazoa - 491; Fungi - 307; Plants - 100; Viruses - 13; Other Eukaryotes - 600 (source: NCBI BLink).
NP_200806.2
  • Polymerase/histidinol phosphatase-like; FUNCTIONS IN: tRNA-intron endonuclease activity, ribonuclease activity, catalytic activity; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: trichome; CONTAINS InterPro DOMAIN/s: Polymerase/histidinol phosphatase-like (InterPro:IPR016195), RNase P subunit p30 (InterPro:IPR002738); Has 397 Blast hits to 397 proteins in 185 species: Archae - 13; Bacteria - 5; Metazoa - 139; Fungi - 139; Plants - 45; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24147099..24149942
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001161317.2 → NP_001154789.1  Polymerase/histidinol phosphatase-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154789.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178UP70, A0A5S9YGB1, F4JXF0
    Conserved Domains (1) summary
    pfam01876
    Location:4 → 248
    RNase_P_p30; RNase P subunit p30

  2. NM_125391.3 → NP_200806.2  Polymerase/histidinol phosphatase-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200806.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JXF1, Q9FJD9
    UniProtKB/TrEMBL
    A0A5S9YGB1
    Conserved Domains (1) summary
    pfam01876
    Location:4 → 247
    RNase_P_p30; RNase P subunit p30

  3. NM_001345380.1 → NP_001332678.1  Polymerase/histidinol phosphatase-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1R7T3D1, A0A5S9YGB1
    Conserved Domains (2) summary
    COG5271
    Location:524 → 639
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    pfam01876
    Location:4 → 248
    RNase_P_p30; RNase P subunit p30

  4. NM_001345381.1 → NP_001332679.1  Polymerase/histidinol phosphatase-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1R7T3D2, A0A5S9YGB1, A0A654GCV9
    Conserved Domains (2) summary
    COG5271
    Location:524 → 650
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    pfam01876
    Location:4 → 247
    RNase_P_p30; RNase P subunit p30
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4JXF1.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.