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SBT5.4 Subtilase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 836102, updated on 18-Sep-2024

Summary

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Official Symbol
SBT5.4
Official Full Name
Subtilase family protein
Primary source
TAIR:AT5G59810
Locus tag
AT5G59810
See related
Araport:AT5G59810
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATSBT5.4; MMN10.6; MMN10_6
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Genomic context

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See SBT5.4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Sequence:
Chromosome: 5; NC_003076.8 (24096807..24100593, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene UPSTREAM OF FLC protein (DUF966) Neighboring gene methyl-CPG-binding domain 7 Neighboring gene C2H2-type zinc finger family protein Neighboring gene DNA-binding protein Neighboring gene Ras-related small GTP-binding family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Overexpression of an Arabidopsis gene encoding a subtilase (AtSBT5.4) produces a clavata-like phenotype. Liu JX, et al. Planta, 2009 Sep. PMID 19588163
  2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The role of one subtilase, AtSBT5.4, in whole plant physiology was investigated by examining gain- or loss-of-function phenotypes.
    Title: Overexpression of an Arabidopsis gene encoding a subtilase (AtSBT5.4) produces a clavata-like phenotype.
Submit: New GeneRIF Correction

General gene information

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NM_125373.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables serine-type endopeptidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
involved_in maintenance of meristem identity IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Subtilase family protein
NP_200789.2
  • SBT5.4; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT2G04160.1); Has 6522 Blast hits to 5856 proteins in 960 species: Archae - 194; Bacteria - 3635; Metazoa - 89; Fungi - 206; Plants - 1959; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    24096807..24100593 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_125373.3 → NP_200789.2  Subtilase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_200789.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JXC5, Q8GXU1, Q9FJF3
    UniProtKB/TrEMBL
    A0A178UAS4
    Conserved Domains (3) summary
    cd04852
    Location:124 → 600
    Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
    cd02120
    Location:367 → 496
    PA_subtilisin_like; PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from ...
    pfam05922
    Location:41 → 126
    Inhibitor_I9; Peptidase inhibitor I9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4JXC5.1

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